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The map label for this gene is intD [C]

Identifier: 160876042

GI number: 160876042

Start: 3476761

End: 3477717

Strand: Direct

Name: intD [C]

Synonym: Sbal195_2932

Alternate gene names: 160876042

Gene position: 3476761-3477717 (Clockwise)

Preceding gene: 160876038

Following gene: 160876043

Centisome position: 65.02

GC content: 46.39

Gene sequence:

>957_bases
ATGAGCATTACTAAAGTTGATGGCGGCTACCGTGTTGATATTCGCCCCTCTGGCCGCAATGGTAAACGTTATCGACGCAC
GTTTGAGACCAAAACCGAAGCGACAAAATATGAGAAGTTCATATTGTCGCAGCACCATAATAAAGACTGGCTCGACGCGC
CTATCGACAGGCGCCCATTATTGGAACTGATTGACCTTTGGTTTCACTTTCACGGCAAAAACTTAAAAGAAGGCGTAAAT
ACACGTAAAAATTTAATCACGACTTGCAAGCTAATGGGCAACCCGCAAAGCCACCAAGTTAACACTAATTTTTACTTAAA
TTATCGGGCGCGACGACTCGAAAAGATCACACCTAAAACCGCCAATCTTGAACTCACCCGCCTGCAAGGCGTGTATAGCG
TATTAATTGCCGCAGGGGAATTTGCTGGCGAGCACCCGCTAAAGTCAGCGCCACCGATAAAGTTACAAGCAAAAGATCAG
TCGTTTTTAACCAAACCACAAATTGCACAGCTTCTAGCGCTATTATCTGGTGAGATGCTGCTTATTGTAAAAATTTGCCT
TAGCACGGGTGCCCGATGGAGCGAAGCGCAAAACCTAACAAGCTCGCAGCTATTGGATGACCGGATTAACTTTATTAACA
CCAAGAACGGCAAAAACCGAACTATCCCCATCACGCGAGAGTTTCGCGCAGAACTCCCTAACGGTAATGGCCGCCTCTTT
ACTGATTGTTATCACCAGTTTCTTGCAGTGCTTAAGTCATCCGGTATCGAGCTCCCCAAAGGCCAAGCGAGCCACGTTTT
AAGACATACGTTTGCATCCCATTTTGTGATGAACGGCGGCAACATTCTCACGCTGCAAAAAATCCTAGGACACGGTTCAA
TTCAGATGACGATGCGTTATGCGCACCTAGCACCAGACCACTTGCAAGAAGCCACAAGGTATAATCCACTGGTTTGA

Upstream 100 bases:

>100_bases
CCTTGTTGCTTCTGGTTGATTTGATTTACTTTTGGTTGATTATGGCTTAATTCTACGTAAAATCCACACACCTAGAGTTG
CACTGCGGAGCCAGTAGATA

Downstream 100 bases:

>100_bases
ATGTGATCCACAAATTGCCCACTTTCGTTTTTTTTAGTTTGATTTGCTTGTGTTTAGATTGATGAAAGCTATATCACAGC
CTCAATATAAACTTTTGTTT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSITKVDGGYRVDIRPSGRNGKRYRRTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLLELIDLWFHFHGKNLKEGVN
TRKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKITPKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQ
SFLTKPQIAQLLALLSGEMLLIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNGNGRLF
TDCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEATRYNPLV

Sequences:

>Translated_318_residues
MSITKVDGGYRVDIRPSGRNGKRYRRTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLLELIDLWFHFHGKNLKEGVN
TRKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKITPKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQ
SFLTKPQIAQLLALLSGEMLLIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNGNGRLF
TDCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEATRYNPLV
>Mature_317_residues
SITKVDGGYRVDIRPSGRNGKRYRRTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPLLELIDLWFHFHGKNLKEGVNT
RKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKITPKTANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQS
FLTKPQIAQLLALLSGEMLLIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNGNGRLFT
DCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEATRYNPLV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36166; Mature: 36035

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITKVDGGYRVDIRPSGRNGKRYRRTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPL
CCCEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
LELIDLWFHFHGKNLKEGVNTRKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKITPKT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEHHHHHHHCCCCC
ANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLSGEML
CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHCCCHHHHHHHHHHCCCHH
LIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNGNGRLF
HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHEECCCCCCCEECEEHHHHHCCCCCCCCEE
TDCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRY
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHHHHCCCCEEEEEEH
AHLAPDHLQEATRYNPLV
HHCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SITKVDGGYRVDIRPSGRNGKRYRRTFETKTEATKYEKFILSQHHNKDWLDAPIDRRPL
CCEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
LELIDLWFHFHGKNLKEGVNTRKNLITTCKLMGNPQSHQVNTNFYLNYRARRLEKITPKT
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEHHHHHHHCCCCC
ANLELTRLQGVYSVLIAAGEFAGEHPLKSAPPIKLQAKDQSFLTKPQIAQLLALLSGEML
CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHCCCHHHHHHHHHHCCCHH
LIVKICLSTGARWSEAQNLTSSQLLDDRINFINTKNGKNRTIPITREFRAELPNGNGRLF
HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHEECCCCCCCEECEEHHHHHCCCCCCCCEE
TDCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRY
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHHHHCCCCEEEEEEH
AHLAPDHLQEATRYNPLV
HHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA