Click here to switch to the map view.

The map label for this gene is yciO [H]

Identifier: 160875910

GI number: 160875910

Start: 3332426

End: 3333046

Strand: Reverse

Name: yciO [H]

Synonym: Sbal195_2799

Alternate gene names: 160875910

Gene position: 3333046-3332426 (Counterclockwise)

Preceding gene: 160875911

Following gene: 160875909

Centisome position: 62.33

GC content: 46.54

Gene sequence:

>621_bases
ATGAGTCAGTTTTTTTATGTACATGAAGTAAATCCGCAAACACGCCTTATCAGTCAAGCTGTTGCCGCCTTAAAAGCGGG
CGGTGTGATTGTTTATCCTACCGATTCGGGTTATGCCTTAGGCTGCTTGATTGGTGAGAAAGATGCGATGACGCGGATGG
CGAGAATTCGTCAAATCGAGAACGATCATAACTTTTCATTGATGTGCCGCGATTTATCTGAGCTTGCGACCTACGCCAAA
GTGGATAATCAGGCGTATCGCATCCTAAAAAGTTGCACGCCTGGGCCTTATACGTTCATTTTTAAAGCGACCAAAGAAGT
GCCGCGTCGTCTGCAAAATGACAAGAAAAAGACCATAGGTATTCGTGTGCCCGACAATGTGATCGCACTGGCGTTGCTTG
AAGCCTTAGATGCGCCGCTGATGTCGACCAGTTTGGTGATGCCAAATGCAGAATTTGCCGAGTCTGATCCTGAACAAATT
CGCGATTTACTCGAGCATCAAGTGGATGTGATTATCCATGGCGGTTATTTAGGTGAAAAACCGACGACAGTGATTGATAT
GTCTGAAGATGGCGCCGAAATTTTGCGTGAAGGCGCGGGTGATATCACGCCTTTCCTCTAA

Upstream 100 bases:

>100_bases
ATTTTCACTTTCCAAGTAATTGGATCGAATTAGGTAAAAATCTGTATCAGCCCCAAGGTATTGATTGGGTCTGGCAATCG
GAATCTTGGATGGAACGACC

Downstream 100 bases:

>100_bases
ATCCAGCGCAATAGATTTATCGCTAATGGATACGAGTGAGCGATGCGGCGAGTGGCTGTGCACATTTGGCAGTTTTATCG
TCGCAGATTTACAGGTATAA

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHEVNPQTRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLSELATYAK
VDNQAYRILKSCTPGPYTFIFKATKEVPRRLQNDKKKTIGIRVPDNVIALALLEALDAPLMSTSLVMPNAEFAESDPEQI
RDLLEHQVDVIIHGGYLGEKPTTVIDMSEDGAEILREGAGDITPFL

Sequences:

>Translated_206_residues
MSQFFYVHEVNPQTRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLSELATYAK
VDNQAYRILKSCTPGPYTFIFKATKEVPRRLQNDKKKTIGIRVPDNVIALALLEALDAPLMSTSLVMPNAEFAESDPEQI
RDLLEHQVDVIIHGGYLGEKPTTVIDMSEDGAEILREGAGDITPFL
>Mature_205_residues
SQFFYVHEVNPQTRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLSELATYAKV
DNQAYRILKSCTPGPYTFIFKATKEVPRRLQNDKKKTIGIRVPDNVIALALLEALDAPLMSTSLVMPNAEFAESDPEQIR
DLLEHQVDVIIHGGYLGEKPTTVIDMSEDGAEILREGAGDITPFL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=66.9902912621359, Blast_Score=299, Evalue=9e-83,
Organism=Escherichia coli, GI2367210, Length=138, Percent_Identity=31.8840579710145, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22817; Mature: 22685

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHEVNPQTRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIE
CCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHC
NDHNFSLMCRDLSELATYAKVDNQAYRILKSCTPGPYTFIFKATKEVPRRLQNDKKKTIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHEEE
IRVPDNVIALALLEALDAPLMSTSLVMPNAEFAESDPEQIRDLLEHQVDVIIHGGYLGEK
EECCHHHHHHHHHHHHCCCHHHHEEECCCCHHCCCCHHHHHHHHHHCEEEEEECCCCCCC
PTTVIDMSEDGAEILREGAGDITPFL
CCEEEEECCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQFFYVHEVNPQTRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIE
CCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHC
NDHNFSLMCRDLSELATYAKVDNQAYRILKSCTPGPYTFIFKATKEVPRRLQNDKKKTIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHEEE
IRVPDNVIALALLEALDAPLMSTSLVMPNAEFAESDPEQIRDLLEHQVDVIIHGGYLGEK
EECCHHHHHHHHHHHHCCCHHHHEEECCCCHHCCCCHHHHHHHHHHCEEEEEECCCCCCC
PTTVIDMSEDGAEILREGAGDITPFL
CCEEEEECCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]