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The map label for this gene is ycfD [H]

Identifier: 160875706

GI number: 160875706

Start: 3068757

End: 3069896

Strand: Direct

Name: ycfD [H]

Synonym: Sbal195_2594

Alternate gene names: 160875706

Gene position: 3068757-3069896 (Clockwise)

Preceding gene: 160875705

Following gene: 160875708

Centisome position: 57.39

GC content: 47.46

Gene sequence:

>1140_bases
ATGTATACACTCAATCTCGATATCGCCCAGTTTCTTAGTGAGTACTGGCAAAAGAAACCCCTGCTGATCAAAAAAGCGTT
TCCACAGTTTGAAGATCCGATCAGTGCCGATGAACTAGCAGGCCTTGCCTGTGAAGAAGAAATCTCTTCGCGTATTGTCG
TCACCAAAGATGATAACTGGGAAGTGGTTCAAGGCCCGTTTGAAGATTACGACAGCTATGGCGAAACCCATTGGCAGTTA
CTAGTGCAAGCGGTCAACCATTGGTATCCCGATTCGCAACCATTAGTTGAAGCGCTGCGTTTTTTACCTGACTGGCGTTT
CGATGACTTGATGGCCTCATTTGCAACGCCAAGTGGTGGTGTGGGCCCGCACGTTGATAACTACGATGTGTTTATCATTC
AAGGTGAAGGTGAACGTCGCTGGACTGTGGGCGACAATACCCCGCAACAACGCCGTGGTGGCAATCCCAACTCGCCGCTG
GTTGAAGACTTCATCCCAATTATCGATGTGGTGTTAGAAAAAGGCGACATGCTTTATATTCCACCTGGTTTCCCGCATTG
CGGCGAAACCCTAACAGTGGCAATGAGTTACTCAATTGGTTTTCGTGCACCAAGCCAGCAAGAACTGATCAGTGAAGTCG
CCGATTACCTGCTCGACAATAACTTAGGTCAGCAGCGTTTCACGTCGCAAACTGAACCGAGTTCAGCGGGTATCGTCAGC
CAAGATCATCAAGTGGGCATAATGTCACTCTTGAGTCAGCTGAGCCAAGATCCCAATAGCTACCAAATCGTGTTAGGTAA
GTTGCTTAGTCAAAACCGTTTCGAGCTTGATTTGTGTGAAGGCGAAGAAGCTTACAGCATTGAAGATTTGCAAGATGCCT
TCGCCCAAGGTGCTGGCATCAGCCGTATCGGTGGTTTGAAAGTACTGCGCCTTGAAAATGACGCCACGCCGCGATTATTC
ATCAATGGTGATGTGCACGAATTGCTAAATACACCAGTAGACGTTATCGCACAGTTGAGCGATAACGTGAGCTTAAGCGC
CGATGAAGCGGCTGAAATATGTCAGCATGAAGAAGTTCAAGCCTTACTGTTGAAACTCATCAATCAAGGTTTCTTCTACT
TAAGCGACAGCGAAGAATAA

Upstream 100 bases:

>100_bases
GTTATTAGCTGAAATTGGCGATGGACAATACTCTTTCATAAACAAAAATGAGGATTAAGGCGACTCACATCTGTGCGATG
TGGTCGCCTTTTTTAACACT

Downstream 100 bases:

>100_bases
GCCCTATCGACTTTGCTCGATGACCTTGTTCTTAACAGAGGAAATCAACATAAAAGTCAGTATAAATAAGGCACTCAATT
GAGTGCCTTATTGTTATTTC

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MYTLNLDIAQFLSEYWQKKPLLIKKAFPQFEDPISADELAGLACEEEISSRIVVTKDDNWEVVQGPFEDYDSYGETHWQL
LVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGGVGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPL
VEDFIPIIDVVLEKGDMLYIPPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGISRIGGLKVLRLENDATPRLF
INGDVHELLNTPVDVIAQLSDNVSLSADEAAEICQHEEVQALLLKLINQGFFYLSDSEE

Sequences:

>Translated_379_residues
MYTLNLDIAQFLSEYWQKKPLLIKKAFPQFEDPISADELAGLACEEEISSRIVVTKDDNWEVVQGPFEDYDSYGETHWQL
LVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGGVGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPL
VEDFIPIIDVVLEKGDMLYIPPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGISRIGGLKVLRLENDATPRLF
INGDVHELLNTPVDVIAQLSDNVSLSADEAAEICQHEEVQALLLKLINQGFFYLSDSEE
>Mature_379_residues
MYTLNLDIAQFLSEYWQKKPLLIKKAFPQFEDPISADELAGLACEEEISSRIVVTKDDNWEVVQGPFEDYDSYGETHWQL
LVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGGVGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPL
VEDFIPIIDVVLEKGDMLYIPPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGISRIGGLKVLRLENDATPRLF
INGDVHELLNTPVDVIAQLSDNVSLSADEAAEICQHEEVQALLLKLINQGFFYLSDSEE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=375, Percent_Identity=43.4666666666667, Blast_Score=317, Evalue=6e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42392; Mature: 42392

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLNLDIAQFLSEYWQKKPLLIKKAFPQFEDPISADELAGLACEEEISSRIVVTKDDNW
CEEECHHHHHHHHHHHCCCCEEHHHHCCCCCCCCCHHHHHCCHHHHHHHCCEEEEECCCC
EVVQGPFEDYDSYGETHWQLLVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGG
CEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCC
VGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPLVEDFIPIIDVVLEKGDMLYI
CCCCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
PPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
SRIGGLKVLRLENDATPRLFINGDVHELLNTPVDVIAQLSDNVSLSADEAAEICQHEEVQ
CCCCCEEEEEECCCCCCEEEECCCHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ALLLKLINQGFFYLSDSEE
HHHHHHHHCCEEEEECCCC
>Mature Secondary Structure
MYTLNLDIAQFLSEYWQKKPLLIKKAFPQFEDPISADELAGLACEEEISSRIVVTKDDNW
CEEECHHHHHHHHHHHCCCCEEHHHHCCCCCCCCCHHHHHCCHHHHHHHCCEEEEECCCC
EVVQGPFEDYDSYGETHWQLLVQAVNHWYPDSQPLVEALRFLPDWRFDDLMASFATPSGG
CEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCC
VGPHVDNYDVFIIQGEGERRWTVGDNTPQQRRGGNPNSPLVEDFIPIIDVVLEKGDMLYI
CCCCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
PPGFPHCGETLTVAMSYSIGFRAPSQQELISEVADYLLDNNLGQQRFTSQTEPSSAGIVS
CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
QDHQVGIMSLLSQLSQDPNSYQIVLGKLLSQNRFELDLCEGEEAYSIEDLQDAFAQGAGI
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
SRIGGLKVLRLENDATPRLFINGDVHELLNTPVDVIAQLSDNVSLSADEAAEICQHEEVQ
CCCCCEEEEEECCCCCCEEEECCCHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ALLLKLINQGFFYLSDSEE
HHHHHHHHCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]