BacMap

Definition	Shewanella baltica OS195 chromosome, complete genome.
Accession	NC_009997
Length	5,347,283

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The map label for this gene is fadH [H]

Identifier: 160875503

GI number: 160875503

Start: 2822213

End: 2823034

Strand: Reverse

Name: fadH [H]

Synonym: Sbal195_2391

Alternate gene names: 160875503

Gene position: 2823034-2822213 (Counterclockwise)

Preceding gene: 160875504

Following gene: 160875502

Centisome position: 52.79

GC content: 50.97

Gene sequence:

>822_bases
ATGTTTAATGCTACGATGTTTAACTATCAAGGTAAGAATGTTGTCGTTGTCGGTGGCACCAGTGGGATAAATCTCGCCAT
TGCAATTGCGTTCGCGCAGGCTGGCGCCAATGTCGCAGTCGCGAGCCGCAGTCAAGATAAAATCGATGCCGCGGTATTGC
AGTTGCAACAGGTCAATTCTGACGGTATTCATTTAGGGGTGAGTTTCGATGTGCGCGATCTTAGCGCCCTTGAAGTCGGT
TTTGATAAAATCGCTGCTGAGTTTGGTTTTATCGATGTGTTGGTAAGCGGCGCGGCGGGGAATTTCCCCGCCAGCGCCGC
AAAGCTTTCGGCCAATGGTTTTAAGTCGGTGATGGACATTGATTTGCTCGGCAGTTTTCAAGTGCTAAAGCAGGCTTATC
CTTTGCTGCGTCGCCCCAATGGCAATATTATCCAGATTTCGGCGCCGCAGGCTTCGATCGCTATGCCAATGCAAGTACAT
GTGTGTGCGGCTAAAGCGGGTGTGGATATGCTAACGCGAACTTTAGCGTTAGAGTGGGGCTGTGAAGGGCTGAGAATTAA
TTCGATTATGCCTGGCCCCATCGCCAATACTGAAGGTTTTAATCGCCTTGCCCCCAGCGCCGCATTACAGCAAAAGGTTG
CCCAATCCGTTCCGCTAAAACGCAACGGCGCAGGTCAGGATATCGCCAATGCCGCACTATTCTTAGGCTCTGAATTAGCT
TCCTATATTACGGGAGTTGTGCTGCCGGTTGATGGCGGTTGGTCACTTGGTGGCGCCAGTATTGCGATGACAGAGCTTGG
CGAATTGGCCGCAAAAATGTAG

Upstream 100 bases:

>100_bases
CTTGATATGATGGATAAAAATTGAAATAGTATCTTGAATGGCAACATAAAATAATTAATCACACCTTAAGTGCATATCTC
ACAGTTCACGGAGAACGCCC

Downstream 100 bases:

>100_bases
TTTGGTTTTAGATTATTCAAAATCGAGAACTTTGATTTTATAGAAATTAAGTAGGTAATGATCCATGGCTAATGCATTAC
AAGAGCAGCTACTCAAAGCA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MFNATMFNYQGKNVVVVGGTSGINLAIAIAFAQAGANVAVASRSQDKIDAAVLQLQQVNSDGIHLGVSFDVRDLSALEVG
FDKIAAEFGFIDVLVSGAAGNFPASAAKLSANGFKSVMDIDLLGSFQVLKQAYPLLRRPNGNIIQISAPQASIAMPMQVH
VCAAKAGVDMLTRTLALEWGCEGLRINSIMPGPIANTEGFNRLAPSAALQQKVAQSVPLKRNGAGQDIANAALFLGSELA
SYITGVVLPVDGGWSLGGASIAMTELGELAAKM

Sequences:

>Translated_273_residues
MFNATMFNYQGKNVVVVGGTSGINLAIAIAFAQAGANVAVASRSQDKIDAAVLQLQQVNSDGIHLGVSFDVRDLSALEVG
FDKIAAEFGFIDVLVSGAAGNFPASAAKLSANGFKSVMDIDLLGSFQVLKQAYPLLRRPNGNIIQISAPQASIAMPMQVH
VCAAKAGVDMLTRTLALEWGCEGLRINSIMPGPIANTEGFNRLAPSAALQQKVAQSVPLKRNGAGQDIANAALFLGSELA
SYITGVVLPVDGGWSLGGASIAMTELGELAAKM
>Mature_273_residues
MFNATMFNYQGKNVVVVGGTSGINLAIAIAFAQAGANVAVASRSQDKIDAAVLQLQQVNSDGIHLGVSFDVRDLSALEVG
FDKIAAEFGFIDVLVSGAAGNFPASAAKLSANGFKSVMDIDLLGSFQVLKQAYPLLRRPNGNIIQISAPQASIAMPMQVH
VCAAKAGVDMLTRTLALEWGCEGLRINSIMPGPIANTEGFNRLAPSAALQQKVAQSVPLKRNGAGQDIANAALFLGSELA
SYITGVVLPVDGGWSLGGASIAMTELGELAAKM

Specific function: Auxiliary enzyme of beta-oxidation. It participates in the metabolism of unsaturated fatty enoyl-CoA esters having double bonds in both even- and odd-numbered positions. Catalyzes the NADP-dependent reduction of 2,4-dienoyl-CoA to yield trans-3- enoyl-CoA

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. 2,4-dienoyl-CoA reductase subfamily [H]

Homologues:

Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=43.5483870967742, Blast_Score=177, Evalue=8e-45,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=32.9365079365079, Blast_Score=131, Evalue=8e-31,
Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=31.8548387096774, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=32.5301204819277, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=32.3404255319149, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=27.710843373494, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=29.9595141700405, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=30.0411522633745, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=28.4552845528455, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=24.3523316062176, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=25.968992248062, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=26.5873015873016, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=31.7204301075269, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=30.7392996108949, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=30.6772908366534, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=28.3464566929134, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=26, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=28.3524904214559, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=26.953125, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=29.8039215686275, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=28.2868525896414, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=28.2945736434109, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=28.8537549407115, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=27.710843373494, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787545, Length=267, Percent_Identity=28.4644194756554, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367365, Length=251, Percent_Identity=25.4980079681275, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=32.4, Blast_Score=133, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17561272, Length=234, Percent_Identity=32.4786324786325, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=28.3582089552239, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=29.8507462686567, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=27.6119402985075, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=272, Percent_Identity=28.3088235294118, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=30.4, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=275, Percent_Identity=28.7272727272727, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=30.1960784313725, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=30, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=30.2040816326531, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=273, Percent_Identity=26.7399267399267, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=26.7716535433071, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=28.4644194756554, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=26.2948207171315, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=30.952380952381, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=26.9662921348315, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=283, Percent_Identity=26.1484098939929, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=278, Percent_Identity=26.978417266187, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=27.4725274725275, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=25.9541984732824, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=25.4826254826255, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=40.8730158730159, Blast_Score=176, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6322861, Length=212, Percent_Identity=27.3584905660377, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=30.7086614173228, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=30.2788844621514, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=31.7647058823529, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=28.6852589641434, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=31.2252964426877, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=27.4193548387097, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=28.5140562248996, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21356301, Length=207, Percent_Identity=25.6038647342995, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.3.1.34 [H]

Molecular weight: Translated: 28262; Mature: 28262

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNATMFNYQGKNVVVVGGTSGINLAIAIAFAQAGANVAVASRSQDKIDAAVLQLQQVNS
CCCCEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCC
DGIHLGVSFDVRDLSALEVGFDKIAAEFGFIDVLVSGAAGNFPASAAKLSANGFKSVMDI
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHEECCCCHHHHHHH
DLLGSFQVLKQAYPLLRRPNGNIIQISAPQASIAMPMQVHVCAAKAGVDMLTRTLALEWG
HHHCHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCEEEEEEHHHHHHHHHHHHHHHHCC
CEGLRINSIMPGPIANTEGFNRLAPSAALQQKVAQSVPLKRNGAGQDIANAALFLGSELA
CCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
SYITGVVLPVDGGWSLGGASIAMTELGELAAKM
HHHCEEEEECCCCCCCCCCEEHHHHHHHHHHCC
>Mature Secondary Structure
MFNATMFNYQGKNVVVVGGTSGINLAIAIAFAQAGANVAVASRSQDKIDAAVLQLQQVNS
CCCCEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCC
DGIHLGVSFDVRDLSALEVGFDKIAAEFGFIDVLVSGAAGNFPASAAKLSANGFKSVMDI
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHEECCCCHHHHHHH
DLLGSFQVLKQAYPLLRRPNGNIIQISAPQASIAMPMQVHVCAAKAGVDMLTRTLALEWG
HHHCHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCEEEEEEHHHHHHHHHHHHHHHHCC
CEGLRINSIMPGPIANTEGFNRLAPSAALQQKVAQSVPLKRNGAGQDIANAALFLGSELA
CCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
SYITGVVLPVDGGWSLGGASIAMTELGELAAKM
HHHCEEEEECCCCCCCCCCEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]