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The map label for this gene is ybiA [H]

Identifier: 160874847

GI number: 160874847

Start: 2077050

End: 2077478

Strand: Direct

Name: ybiA [H]

Synonym: Sbal195_1731

Alternate gene names: 160874847

Gene position: 2077050-2077478 (Clockwise)

Preceding gene: 160874846

Following gene: 160874848

Centisome position: 38.84

GC content: 40.56

Gene sequence:

>429_bases
ATGACGATCTTTTTCTATACAAAGACAGATGAGTTTGGAGAGTTTAGTAACTTCTCAAAGTTCGGTGTTGAGATGGACGG
GGTTTGGTGGCCCACAGTGGAACACTACTTTCAGGCTCAAAAATTTGAGAGTAAAGAGTATCAAGAAAGAATCAGAACAG
CCCATACCCCCAAAATTGCTGCTGAACTTGGCAGGAGCCGGAAAGTAGCCATAAGAACTGATTGGGAAAAAGTTAAGGAC
AACATTATGTATGAAGCAGTCCTGAAAAAGTTCAAAACCCATTCTGAGTTAGCAGCATTACTTAAGTTCACAGGAACCCA
AGACATAGTTGAGAATGCTCCAGGTGACTATTATAGGGGTTGTGGTCAAGATGGGACTGGCCAAAATAAACTAGGAAAAA
TTTTGGTTAAGGTTCGCGATGAAATATAA

Upstream 100 bases:

>100_bases
AAGTTGCTTAATTTTGCTCCGGCCACAAAAAGCGTGGCCTCCGCTGGACTGCCTGCGCTGCGGCAGCCTATTAGTAAAGC
GTTATATTTCATAGGTCAGC

Downstream 100 bases:

>100_bases
CAAGTGGCTGTTATTTGTTACGGCGACAAAAAGCGTGGCCTCCACCGGACGCGCTAACGCGCGCCGCAAAGCAAAGCGTT
ATGTTGCCTGGTGAACACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTIFFYTKTDEFGEFSNFSKFGVEMDGVWWPTVEHYFQAQKFESKEYQERIRTAHTPKIAAELGRSRKVAIRTDWEKVKD
NIMYEAVLKKFKTHSELAALLKFTGTQDIVENAPGDYYRGCGQDGTGQNKLGKILVKVRDEI

Sequences:

>Translated_142_residues
MTIFFYTKTDEFGEFSNFSKFGVEMDGVWWPTVEHYFQAQKFESKEYQERIRTAHTPKIAAELGRSRKVAIRTDWEKVKD
NIMYEAVLKKFKTHSELAALLKFTGTQDIVENAPGDYYRGCGQDGTGQNKLGKILVKVRDEI
>Mature_141_residues
TIFFYTKTDEFGEFSNFSKFGVEMDGVWWPTVEHYFQAQKFESKEYQERIRTAHTPKIAAELGRSRKVAIRTDWEKVKDN
IMYEAVLKKFKTHSELAALLKFTGTQDIVENAPGDYYRGCGQDGTGQNKLGKILVKVRDEI

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=140, Percent_Identity=44.2857142857143, Blast_Score=139, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 16472; Mature: 16341

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFFYTKTDEFGEFSNFSKFGVEMDGVWWPTVEHYFQAQKFESKEYQERIRTAHTPKIA
CEEEEEECCCCCCCCCCHHHCCCEECCEECHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
AELGRSRKVAIRTDWEKVKDNIMYEAVLKKFKTHSELAALLKFTGTQDIVENAPGDYYRG
HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHC
CGQDGTGQNKLGKILVKVRDEI
CCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIFFYTKTDEFGEFSNFSKFGVEMDGVWWPTVEHYFQAQKFESKEYQERIRTAHTPKIA
EEEEEECCCCCCCCCCHHHCCCEECCEECHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
AELGRSRKVAIRTDWEKVKDNIMYEAVLKKFKTHSELAALLKFTGTQDIVENAPGDYYRG
HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHC
CGQDGTGQNKLGKILVKVRDEI
CCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]