Click here to switch to the map view.

The map label for this gene is rssA [H]

Identifier: 160874800

GI number: 160874800

Start: 2031060

End: 2032007

Strand: Direct

Name: rssA [H]

Synonym: Sbal195_1683

Alternate gene names: 160874800

Gene position: 2031060-2032007 (Clockwise)

Preceding gene: 160874795

Following gene: 160874802

Centisome position: 37.98

GC content: 51.48

Gene sequence:

>948_bases
ATGGCTAACGGAACAACCCCTTCGGTTGGTATTGCCTTGGGCAGTGGCGCTGCGAAAGGTTGGGCGCACATTGGCGTGTT
GAATGGCCTTGCCGCCATGGGGATCAAACCCGATAAAGTTGCGGGATGTTCGGTGGGCGCTTTAGTGGGCGCCGCGTACG
CCCATGACCATTTACCTGAATTAGAAGAATGGGTGCGGAGTTTCTCTAGCTGGGACGTGCTTGGCTTGATGGACATTCGA
TGGCGTAAAGGCGGTCTTATCGGCGGTGATAAAGTATTTGATGTGCTGCAAGCTCGAATAGGGGATGTGAATATTGAGAA
CCTCAATCGTCCTTTTGCGGCGGTTGCGACCGACTTGTACTCGGGGCAGGAGATTTGGTTTACTGAAGGGGATTTACGTC
AAGCGGTGCGCGCTTCTTGCTCTATGCCGGGGATTTTGGCGCCCGTGAGACAAGGTGACCGCTGGCTTGTCGATGGTGCT
GTGGTGAATCCAGTGCCTGTTTCTGTTAGCCGTGCCATGGGCGTCGATGTAGTGATAGCCGTGGATTTATATGGTTATCA
TTCTGGTCGCATCCAAGTATTGCCGGTGAGCATGACGAGCCAAAAAAACGTTGAAGCTGAAATGGATATGTCAGCGCGAC
AAGAAACTGGATTTATGGATTTGTTTGCCCGTGGCCGAGATTATGTCAGCAATCTGACCGATAAGTTTTCACTTGGCACT
AAATCGAATCCAGGCATGATTGCTGTAATGTCGCAATCTATGGGCATTTTAGAGCAAAGACATAAACGGGCGCGCTTGAT
GGGCGATCCGCCAGATATTTGTATTGTGCCTGAGGTTGGCAATATCGGCACTATGGAGTTTCACCGTGCTGATGAGGCGA
TTGCCGCTGGTGAAGCTGCTGTGGAGAAGGTGGCTCACTTGATTGAAGCTGCACTGTGGAAGGGCTAA

Upstream 100 bases:

>100_bases
ATGTTACAAGTACTTAATTGCCTTGGCTTCACCAATTGACAGTGGATATGAAAGGATTTTACGTTATCGTGTAGTGGATT
GAGTAACAGGAGAATGATTT

Downstream 100 bases:

>100_bases
AACGTTAAAAGATAAACAGTTGACTATCAAATAGAAAAAGTCGGTATAACTCGCGTTATACCGACTTTTTACTATCTAAA
ACTGAGTCTTGCTATCTAAA

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MANGTTPSVGIALGSGAAKGWAHIGVLNGLAAMGIKPDKVAGCSVGALVGAAYAHDHLPELEEWVRSFSSWDVLGLMDIR
WRKGGLIGGDKVFDVLQARIGDVNIENLNRPFAAVATDLYSGQEIWFTEGDLRQAVRASCSMPGILAPVRQGDRWLVDGA
VVNPVPVSVSRAMGVDVVIAVDLYGYHSGRIQVLPVSMTSQKNVEAEMDMSARQETGFMDLFARGRDYVSNLTDKFSLGT
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDICIVPEVGNIGTMEFHRADEAIAAGEAAVEKVAHLIEAALWKG

Sequences:

>Translated_315_residues
MANGTTPSVGIALGSGAAKGWAHIGVLNGLAAMGIKPDKVAGCSVGALVGAAYAHDHLPELEEWVRSFSSWDVLGLMDIR
WRKGGLIGGDKVFDVLQARIGDVNIENLNRPFAAVATDLYSGQEIWFTEGDLRQAVRASCSMPGILAPVRQGDRWLVDGA
VVNPVPVSVSRAMGVDVVIAVDLYGYHSGRIQVLPVSMTSQKNVEAEMDMSARQETGFMDLFARGRDYVSNLTDKFSLGT
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDICIVPEVGNIGTMEFHRADEAIAAGEAAVEKVAHLIEAALWKG
>Mature_314_residues
ANGTTPSVGIALGSGAAKGWAHIGVLNGLAAMGIKPDKVAGCSVGALVGAAYAHDHLPELEEWVRSFSSWDVLGLMDIRW
RKGGLIGGDKVFDVLQARIGDVNIENLNRPFAAVATDLYSGQEIWFTEGDLRQAVRASCSMPGILAPVRQGDRWLVDGAV
VNPVPVSVSRAMGVDVVIAVDLYGYHSGRIQVLPVSMTSQKNVEAEMDMSARQETGFMDLFARGRDYVSNLTDKFSLGTK
SNPGMIAVMSQSMGILEQRHKRARLMGDPPDICIVPEVGNIGTMEFHRADEAIAAGEAAVEKVAHLIEAALWKG

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=30.6010928961749, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=30.6010928961749, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=30.6010928961749, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=30.6010928961749, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=30.6010928961749, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI148727290, Length=183, Percent_Identity=32.2404371584699, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI148727335, Length=183, Percent_Identity=32.2404371584699, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI226510936, Length=296, Percent_Identity=48.6486486486487, Blast_Score=287, Evalue=5e-79,
Organism=Caenorhabditis elegans, GI193204778, Length=164, Percent_Identity=30.4878048780488, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=182, Percent_Identity=29.6703296703297, Blast_Score=86, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281376913, Length=184, Percent_Identity=33.1521739130435, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571388, Length=183, Percent_Identity=32.2404371584699, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 33699; Mature: 33568

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTTPSVGIALGSGAAKGWAHIGVLNGLAAMGIKPDKVAGCSVGALVGAAYAHDHLPE
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHH
LEEWVRSFSSWDVLGLMDIRWRKGGLIGGDKVFDVLQARIGDVNIENLNRPFAAVATDLY
HHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHC
SGQEIWFTEGDLRQAVRASCSMPGILAPVRQGDRWLVDGAVVNPVPVSVSRAMGVDVVIA
CCCEEEEECHHHHHHHHHHCCCCCCCHHHCCCCEEEECCEEECCCCCCHHHHCCCEEEEE
VDLYGYHSGRIQVLPVSMTSQKNVEAEMDMSARQETGFMDLFARGRDYVSNLTDKFSLGT
EEEEEECCCEEEEEEEECCCCCCCCHHHCCHHHHHCCHHHHHHCCHHHHHHHHHHHCCCC
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDICIVPEVGNIGTMEFHRADEAIAAGEAA
CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEHHHCCHHHHHHHHH
VEKVAHLIEAALWKG
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANGTTPSVGIALGSGAAKGWAHIGVLNGLAAMGIKPDKVAGCSVGALVGAAYAHDHLPE
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHH
LEEWVRSFSSWDVLGLMDIRWRKGGLIGGDKVFDVLQARIGDVNIENLNRPFAAVATDLY
HHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHC
SGQEIWFTEGDLRQAVRASCSMPGILAPVRQGDRWLVDGAVVNPVPVSVSRAMGVDVVIA
CCCEEEEECHHHHHHHHHHCCCCCCCHHHCCCCEEEECCEEECCCCCCHHHHCCCEEEEE
VDLYGYHSGRIQVLPVSMTSQKNVEAEMDMSARQETGFMDLFARGRDYVSNLTDKFSLGT
EEEEEECCCEEEEEEEECCCCCCCCHHHCCHHHHHCCHHHHHHCCHHHHHHHHHHHCCCC
KSNPGMIAVMSQSMGILEQRHKRARLMGDPPDICIVPEVGNIGTMEFHRADEAIAAGEAA
CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEHHHCCHHHHHHHHH
VEKVAHLIEAALWKG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]