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The map label for this gene is yebA [H]

Identifier: 160874365

GI number: 160874365

Start: 1482036

End: 1483442

Strand: Reverse

Name: yebA [H]

Synonym: Sbal195_1246

Alternate gene names: 160874365

Gene position: 1483442-1482036 (Counterclockwise)

Preceding gene: 160874367

Following gene: 160874364

Centisome position: 27.74

GC content: 45.56

Gene sequence:

>1407_bases
ATGGGAAAGGTTATAACGTTATTTAAATTGTTGCCTAAAAAGCATCAAATTCTCCTCAGCATTCTTTCAGTTATCACTAT
GATAACCATGCTACTACCTTCTGAAGAAGCGCAAGCTTCAAGACAAACCACCAGCATAGATGACCAAGCTCAAATCAACA
CCCGTTATGATGTGCCTTTAGCCTTTCGCTCGCCTGAACGTCCTGAGTTATTAGAGGGCCAAACAGACAATACGCCCACA
AATGCTGCGCCATTATCGTCAACTGACGCGCTTGCCGCGGGTGATGCTAATAATCCAGCCACTGAATCCTTAGAGAGTGC
CCATCACAGGGACGTCGAACATTTTAACGTCAAGAACGGTGATACCTTAGCCGCGGTATTTGATCGCGCAGGGTTAACCA
GTAAAGACGTGTATGAAATCACCCAACTCCCCTTAGCCAAGCAAAATTTACTTAAGATTATGCCGGGCGAAGAAATCGTG
ATTTCGAAAGATATAAATGGTGATTTGACCGAAGTGCGTTATCGCGTGAATGCAGTTTCAACGCTCATCATCACCAAGAA
TCAAAATCAATACCAAGAAAAAATATCCGAGAAGGATGTGGAAATTCGCAGCCATTTCACCAGCGCTAAGATTAAGAGCA
ACTTCTGGAACGCCGCCGTCGATGCAGGCATGAATGCAAACCAGATCATGCAGTTATCGACCGTATTCGGCTGGGATATC
GACTTTGCCTTAGATTTACGCGAGGGCGACAGCTTTGCCATTATTTATGAGCAAGAATATGCCGATGGCGAATTTTTGCG
TAACGGCAATATCTTAGCCGCAGAATTTGTAAACCAAGATGAGCGCTATACAGCCATTCGCTATACCGACGGTAACTATT
ATTCCGAGAATGGCACTAGCATGCGTAAAGCCTTCTTGCGCTCGCCAGTCGATTTTAAATATGTCAGCTCAAACTTCAAT
CCAAGACGTTTGCACCCAGTAACGGGCCAAGTCAAAGCCCATCGCGGTGTGGACTACGTCGCCGCCATTGGCACGCCCAT
TAAAGCGGCGGGTAGCGGACGCGTCATCGAGGCGGGCTACAATCAATTCAACGGTAACTATGTGTTTATCAAACACAACG
ATACCTATACCACCAAATATCTTCACCTCACTAAGCGCAACGTCAGCAAAGGAGCCAGCGTTAAGCAAGGGCAAATCATA
GGTACTTTAGGTAAAACGGGGCGCGTCACGGGTGCACATTTGCATTACGAATTTATCGTCAATGGCGTCCATCGCAACCC
AAGAACCATAACGCTACCTAAAGCCGAATCGATTGCGAGAAAAGAAAAAAATCAATTCGATGCACTTAGTCAGCAATTGA
TGACTACACTTTCGCAAAACAAGCAAACGCAATTGGCAATGCAATAA

Upstream 100 bases:

>100_bases
TCATAAAATGAAGAGACTTATGTTACTTGTTAGCCACCACAATTGAAAGTGTGTACACTAACGGGATTATTTAAGTCTCT
GGTTATTGGTATCGGCGTCA

Downstream 100 bases:

>100_bases
CGACGGACGGATTCCTCCCAATGAAAAACGCTTATTATATTGGACTTATGTCAGGCACCAGCATGGACGGTGTCGATGCC
GTATTGGTCGACTTTTCTGG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MGKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPLAFRSPERPELLEGQTDNTPT
NAAPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNGDTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIV
ISKDINGDLTEVRYRVNAVSTLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFN
PRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQII
GTLGKTGRVTGAHLHYEFIVNGVHRNPRTITLPKAESIARKEKNQFDALSQQLMTTLSQNKQTQLAMQ

Sequences:

>Translated_468_residues
MGKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPLAFRSPERPELLEGQTDNTPT
NAAPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNGDTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIV
ISKDINGDLTEVRYRVNAVSTLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFN
PRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQII
GTLGKTGRVTGAHLHYEFIVNGVHRNPRTITLPKAESIARKEKNQFDALSQQLMTTLSQNKQTQLAMQ
>Mature_467_residues
GKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPLAFRSPERPELLEGQTDNTPTN
AAPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNGDTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIVI
SKDINGDLTEVRYRVNAVSTLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDID
FALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTSMRKAFLRSPVDFKYVSSNFNP
RRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGYNQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIG
TLGKTGRVTGAHLHYEFIVNGVHRNPRTITLPKAESIARKEKNQFDALSQQLMTTLSQNKQTQLAMQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=457, Percent_Identity=30.4157549234136, Blast_Score=211, Evalue=9e-56,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 52210; Mature: 52078

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPL
CCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEECEEECCEE
AFRSPERPELLEGQTDNTPTNAAPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNG
EECCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEECCCC
DTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIVISKDINGDLTEVRYRVNAVS
CCCEEEHHHCCCCCCHHHHHHHCCCCHHHHHEECCCCEEEEEECCCCCHHHHHEEEEEEE
TLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
EEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHEEEEHHHCCCCE
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTS
EEEEEECCCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCCEEEEEEECCCEECCCCHH
MRKAFLRSPVDFKYVSSNFNPRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGY
HHHHHHCCCCCEEEECCCCCCCEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCC
NQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTLGKTGRVTGAHLHYEFIV
CCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
NGVHRNPRTITLPKAESIARKEKNQFDALSQQLMTTLSQNKQTQLAMQ
ECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
GKVITLFKLLPKKHQILLSILSVITMITMLLPSEEAQASRQTTSIDDQAQINTRYDVPL
CCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEECEEECCEE
AFRSPERPELLEGQTDNTPTNAAPLSSTDALAAGDANNPATESLESAHHRDVEHFNVKNG
EECCCCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEECCCC
DTLAAVFDRAGLTSKDVYEITQLPLAKQNLLKIMPGEEIVISKDINGDLTEVRYRVNAVS
CCCEEEHHHCCCCCCHHHHHHHCCCCHHHHHEECCCCEEEEEECCCCCHHHHHEEEEEEE
TLIITKNQNQYQEKISEKDVEIRSHFTSAKIKSNFWNAAVDAGMNANQIMQLSTVFGWDI
EEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHEEEEHHHCCCCE
DFALDLREGDSFAIIYEQEYADGEFLRNGNILAAEFVNQDERYTAIRYTDGNYYSENGTS
EEEEEECCCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCCEEEEEEECCCEECCCCHH
MRKAFLRSPVDFKYVSSNFNPRRLHPVTGQVKAHRGVDYVAAIGTPIKAAGSGRVIEAGY
HHHHHHCCCCCEEEECCCCCCCEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCC
NQFNGNYVFIKHNDTYTTKYLHLTKRNVSKGASVKQGQIIGTLGKTGRVTGAHLHYEFIV
CCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEE
NGVHRNPRTITLPKAESIARKEKNQFDALSQQLMTTLSQNKQTQLAMQ
ECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]