Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 160874102

GI number: 160874102

Start: 1166839

End: 1167747

Strand: Reverse

Name: rarD [C]

Synonym: Sbal195_0982

Alternate gene names: 160874102

Gene position: 1167747-1166839 (Counterclockwise)

Preceding gene: 160874104

Following gene: 160874101

Centisome position: 21.84

GC content: 42.35

Gene sequence:

>909_bases
ATGGATGCTATGAAATCAAACCCCAATACCTCGCTCGGCGTAAGTCTGAATGTAGCCGCATCGGCACTTTTTGCGTTGAT
GTTTGCGTATACAGCACTATTGGACACTCTCAGTGGTGAGGAAATCTATGGTTGGCGCATACTATTCACGCTTCCACTTT
TAACCGTTTTTATCGGCGTGCAGGGGTACTGGTCGCAAGTCATCGTTATTTATCAGCGAATAATCCGTGAAAAGCACTTT
TGGTTAACTCGAATAGCATCAAGCTTTTTAATCGCCATTCAGCTTTGGTTATTCATGTGGGCTCCCAGCAATGGATATGG
CTTAGCGGTGTCACTTGGCTATTTTATTATGCCCATCACTATGGTGGTCGTTGGCCGATTCGCATTTAAAGACAAATTGT
CACGAATGCAATTGATAGCTTGCCTGTTTGCATTACTAGGTGTGTTAAATCAACTAGTCATTTCCCAAACATTAGCTTGG
CCAACACTTGCCATTTGCCTAGGATACCCAATCTATTTCTGGTTAAGACAAAAAACTGATACGAATAACATTGGCGGAGT
ATGGTTTGATATGATGCTCAGTGTGCCAGTGAGTATCTACTTTATCTTGAGTGGTGGCTATGTGATTGAAAGCTTAAGTC
ATAACAGCTCACCACTATGGTTAGCCATTGGCTTAGGTGCAATAAGTGCATTAGCGCTCGGGTTACAATCCTTATCTGCA
CCATACCTAAATCTAAGTCTTTTCGGGCTACTTATCTATGTCGAACCTTTACTATTATTGGTCGTTGCAATAATGCTTGG
CGAAACCATCACCCCAGATGAATGGCCTACCTATATAGGAATTTGGCTTGCCGTTATTGTGCTGATACTAGAAGGGGGGC
TTAGAGTAATTAAATCGAAAAACAGCTAG

Upstream 100 bases:

>100_bases
TTGGCATCCAAATGAGAAATTTTATCGAAAATAGCATTAATTTAGAGAACTTATTTTAAAAGTAACACTATAAAATACTG
CTAAATTACCTTTTTGCGTT

Downstream 100 bases:

>100_bases
GTATGAAGCATTAGCAAAATTTGGCCTATCGCGGATTACGAATCAGTACTTGGCTGGCACCGCTAAATTGAAATGGGGCG
TGCGACGTGAAGTCGTATGA

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDAMKSNPNTSLGVSLNVAASALFALMFAYTALLDTLSGEEIYGWRILFTLPLLTVFIGVQGYWSQVIVIYQRIIREKHF
WLTRIASSFLIAIQLWLFMWAPSNGYGLAVSLGYFIMPITMVVVGRFAFKDKLSRMQLIACLFALLGVLNQLVISQTLAW
PTLAICLGYPIYFWLRQKTDTNNIGGVWFDMMLSVPVSIYFILSGGYVIESLSHNSSPLWLAIGLGAISALALGLQSLSA
PYLNLSLFGLLIYVEPLLLLVVAIMLGETITPDEWPTYIGIWLAVIVLILEGGLRVIKSKNS

Sequences:

>Translated_302_residues
MDAMKSNPNTSLGVSLNVAASALFALMFAYTALLDTLSGEEIYGWRILFTLPLLTVFIGVQGYWSQVIVIYQRIIREKHF
WLTRIASSFLIAIQLWLFMWAPSNGYGLAVSLGYFIMPITMVVVGRFAFKDKLSRMQLIACLFALLGVLNQLVISQTLAW
PTLAICLGYPIYFWLRQKTDTNNIGGVWFDMMLSVPVSIYFILSGGYVIESLSHNSSPLWLAIGLGAISALALGLQSLSA
PYLNLSLFGLLIYVEPLLLLVVAIMLGETITPDEWPTYIGIWLAVIVLILEGGLRVIKSKNS
>Mature_302_residues
MDAMKSNPNTSLGVSLNVAASALFALMFAYTALLDTLSGEEIYGWRILFTLPLLTVFIGVQGYWSQVIVIYQRIIREKHF
WLTRIASSFLIAIQLWLFMWAPSNGYGLAVSLGYFIMPITMVVVGRFAFKDKLSRMQLIACLFALLGVLNQLVISQTLAW
PTLAICLGYPIYFWLRQKTDTNNIGGVWFDMMLSVPVSIYFILSGGYVIESLSHNSSPLWLAIGLGAISALALGLQSLSA
PYLNLSLFGLLIYVEPLLLLVVAIMLGETITPDEWPTYIGIWLAVIVLILEGGLRVIKSKNS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=28.135593220339, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33517; Mature: 33517

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAMKSNPNTSLGVSLNVAASALFALMFAYTALLDTLSGEEIYGWRILFTLPLLTVFIGV
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
QGYWSQVIVIYQRIIREKHFWLTRIASSFLIAIQLWLFMWAPSNGYGLAVSLGYFIMPIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
MVVVGRFAFKDKLSRMQLIACLFALLGVLNQLVISQTLAWPTLAICLGYPIYFWLRQKTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCC
TNNIGGVWFDMMLSVPVSIYFILSGGYVIESLSHNSSPLWLAIGLGAISALALGLQSLSA
CCCCCHHHHHHHHHHHHHEEEEEECCHHEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCC
PYLNLSLFGLLIYVEPLLLLVVAIMLGETITPDEWPTYIGIWLAVIVLILEGGLRVIKSK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCC
NS
CC
>Mature Secondary Structure
MDAMKSNPNTSLGVSLNVAASALFALMFAYTALLDTLSGEEIYGWRILFTLPLLTVFIGV
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
QGYWSQVIVIYQRIIREKHFWLTRIASSFLIAIQLWLFMWAPSNGYGLAVSLGYFIMPIT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
MVVVGRFAFKDKLSRMQLIACLFALLGVLNQLVISQTLAWPTLAICLGYPIYFWLRQKTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCC
TNNIGGVWFDMMLSVPVSIYFILSGGYVIESLSHNSSPLWLAIGLGAISALALGLQSLSA
CCCCCHHHHHHHHHHHHHEEEEEECCHHEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCC
PYLNLSLFGLLIYVEPLLLLVVAIMLGETITPDEWPTYIGIWLAVIVLILEGGLRVIKSK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCC
NS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]