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The map label for this gene is yciR [C]

Identifier: 160874087

GI number: 160874087

Start: 1148160

End: 1150394

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_0967

Alternate gene names: 160874087

Gene position: 1150394-1148160 (Counterclockwise)

Preceding gene: 160874088

Following gene: 160874086

Centisome position: 21.51

GC content: 45.86

Gene sequence:

>2235_bases
ATGATTAGTCAAGAACAAGATGTCTTTTTTTTAGACGAACAACCGTCACCACAACACCTCGAAAATCAAAAAACAGTCAA
AATACTCACGGTGGACGATGACTCAAACTTCCAACGTTCGACCGCCTTCGCATTATCTACCCTCAAAGTATTAGATTGTA
AAATTGAGCTGTCCCAAGCGTTTAGCTATGCAGAAGCCTGCCAAGTGTTAACGAAGGAAAATGATTTTGCGATCGCCTTA
GTCGATGTGGTGATGGAAACCGAAGATGCAGGGCTGCGGTTAGTCCGTGCTATTCGGGAAGTGCTCGGTAACGAAAAAAT
CCGCATTATACTGCTTACAGGTCAGCCCGGTATGGCCCCTATTTTCGATGTAATGCGGGATTACGATATCAACGACTATT
GGACTAAATCCGAGTTATCGGCCGATAGACTGCAAACTATTCTCACGACTAACCTGCGCTCATATCAACAAATTAGCAGT
ATTGCCAATGCTAAGCGTGGTTTGCAACTGATTGCCGAGTCCAGCGGCGCGCTCTACACCTCACGCAATATCAAAGAACT
CTCAGGCAAGATGCTGCGACAATTATCCCAGCTATTAAACCTGCCCCATGGTGGCATTGTGTGCGTGAAATCAACGGGGG
AATTAACTGAACAGGGTATTTCCCACCAAATTATTGCCGCATCGGGCGAGTTTGAACCTTATTTTGGCTATGCTTTACAG
CAGCTTGAGCAGCAACATATCCGAGCACAACTTGAACTTTGCCTGAGCCGCAGGCAGTCTCGTATCGAAAATGACTTTAC
TTGCCTCTTCTTCCCCGACGAACTCGCTGGCGCCGATTACTCCGTTTATTTAGCTACAGGTAGGCCACTAGATATCACGG
AAACTGAACTGATCCGTGTGTTTAGTATGAATATTTGTGGCGGCTTGCATAGCGTGTCGCTAATGAGCCAACTAGATAAG
ATTGCTTTTGAAGATCCGCTCGTCAAAATCCCTAATCTCAACGTGCTGATCCGCACCTTAGAAGGCGTGCTGGCGGAAGA
CATTCGTGAAAAATTTAATTTATTGATCATTGATATTGATAAGTTTTCCGACTTTAATCGTGTATTTGGTTCGCCACAAG
GCAACGAGATGCTCAAACACGTTGCCTGTTGTTTGCGTGAACACTTTGATGCTTGTGTGTTAGTAGCTCGCCTCAAGGAT
GATAAATTTGCCGTGCTCGGCCCTAAGACCTTAGTCACCGCCGACATTATTAGCCGACTCTTTATTCAACCCTATCAACA
GGGAAAATCGAAGATCACGGTTAATATCAGCACTGTCACACTGCCACTAGAGTTAGCCGATGGCACTGCGGTTGATGCCA
TAACACAAGTCAACATGGCCCTGAAAACCGCCAAAAAGTTAGGTATTAGACAACATGTGACTTACCAACAAGCCAATGAC
GATAATGTGGCCTATCACTTCGAACTCTTACAATCGCTGCAACACAGTATTACCTGTAATGACATCCATATTGCACTGCA
GCCGCAAGTCTGTATTAAAACGGGTGAAGTCGTCGGGGTTGAAGCGCTGGCTCGCTGGACCTTGCCAAATGGTCAAAATG
TGCCGCCGTTGGATTTTATCCCCATTGCCGAAGCGACAGGTTTGATCACCCAACTCGGTGAGCAACTATTCGTGCAATCT
TGCCAAGCACTCTGCGCACTCAATGAGGCGGGTTATACCAATTTGTGTATGGGAGTGAACTTATCGGCCATGCAGTTCGA
ACAGGAGAACATCGTCGATATTTTAAAACAGCACATTGCCGACGCTAACATGCCTCCAGGTCAGATAGAAGTCGAAGTCA
CCGAATCGATTGCGATGCAAAATTTCGAAACCATCCGCAAGCAGTTAAATGACTTACGCTCGATAGATATTAGAGTCGCG
ATTGACGATTTTGGTACCGGATTTTCCTCATTAGCCTATCTCAGCAAACTAACCTTCGACCGCATTAAGATTGATAAATC
CTTTATCGACAATGTCACCTCAGATGATGGCGCCGCTGCGATAGTCGATAGCATTATCTTGTTAGGACAACGCTTCCACA
TGAATGTGATTGCCGAAGGCGTCGAGACTAAAGAGCAAGCGAAATGGCTAAGCGACCGCGGCTGCCACGATGCCCAAGGC
TACTTTTATGCTAAGCCCATGCCACTACCGGAGTTATTAACTTGGCTTAAAAACTACCAAAAAACACCACTATGA

Upstream 100 bases:

>100_bases
TGAATAAACCCCATCTGTCGCAAATACTCTATGTATAAAAAATGCTCGTTTTATTTGCTGAGTGAATAAGGATGCGAATG
GCATCTCAAGGATGGAGATA

Downstream 100 bases:

>100_bases
CAGCGCCATCGCAATTGACTCAGCCTACCTTCTGGGGCTACTGGCTCAGATTCATGCTGCCGTGGTTATTGTTGGTGCCC
ATACTCACCACTTTGCTTTA

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MISQEQDVFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELSQAFSYAEACQVLTKENDFAIAL
VDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAPIFDVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISS
IANAKRGLQLIAESSGALYTSRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDIDKFSDFNRVFGSPQGNEMLKHVACCLREHFDACVLVARLKD
DKFAVLGPKTLVTADIISRLFIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
DNVAYHFELLQSLQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQLGEQLFVQS
CQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVA
IDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
YFYAKPMPLPELLTWLKNYQKTPL

Sequences:

>Translated_744_residues
MISQEQDVFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELSQAFSYAEACQVLTKENDFAIAL
VDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAPIFDVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISS
IANAKRGLQLIAESSGALYTSRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDIDKFSDFNRVFGSPQGNEMLKHVACCLREHFDACVLVARLKD
DKFAVLGPKTLVTADIISRLFIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
DNVAYHFELLQSLQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQLGEQLFVQS
CQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVA
IDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
YFYAKPMPLPELLTWLKNYQKTPL
>Mature_744_residues
MISQEQDVFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELSQAFSYAEACQVLTKENDFAIAL
VDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAPIFDVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISS
IANAKRGLQLIAESSGALYTSRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVSLMSQLDK
IAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDIDKFSDFNRVFGSPQGNEMLKHVACCLREHFDACVLVARLKD
DKFAVLGPKTLVTADIISRLFIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
DNVAYHFELLQSLQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQLGEQLFVQS
CQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVA
IDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
YFYAKPMPLPELLTWLKNYQKTPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=511, Percent_Identity=27.9843444227006, Blast_Score=198, Evalue=9e-52,
Organism=Escherichia coli, GI87081921, Length=426, Percent_Identity=29.3427230046948, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=32.258064516129, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=33.8461538461538, Blast_Score=152, Evalue=1e-37,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=34.8178137651822, Blast_Score=150, Evalue=4e-37,
Organism=Escherichia coli, GI226510982, Length=431, Percent_Identity=27.8422273781903, Blast_Score=149, Evalue=9e-37,
Organism=Escherichia coli, GI1786507, Length=256, Percent_Identity=33.203125, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.8936170212766, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=33.1983805668016, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1787055, Length=367, Percent_Identity=24.7956403269755, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1788849, Length=279, Percent_Identity=30.1075268817204, Blast_Score=104, Evalue=3e-23,
Organism=Escherichia coli, GI87082096, Length=244, Percent_Identity=29.5081967213115, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=36, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 83064; Mature: 83064

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISQEQDVFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELSQA
CCCCCCCEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEHHHH
FSYAEACQVLTKENDFAIALVDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAP
HHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
IFDVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISSIANAKRGLQLIAESSGALYT
HHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEE
SRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCEEEEEECCCCCHHHHHHHH
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCEEEEEECCCCCCCCHHHHHHH
FSMNICGGLHSVSLMSQLDKIAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDID
HHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
KFSDFNRVFGSPQGNEMLKHVACCLREHFDACVLVARLKDDKFAVLGPKTLVTADIISRL
CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHH
FIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
HHHHHHCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHCEEECCCC
DNVAYHFELLQSLQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFI
CCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEEHHHHHHCCCCCCCCCCCCCEE
PIAEATGLITQLGEQLFVQSCQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHC
DANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFD
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHH
RIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
HHEECHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
YFYAKPMPLPELLTWLKNYQKTPL
EEEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MISQEQDVFFLDEQPSPQHLENQKTVKILTVDDDSNFQRSTAFALSTLKVLDCKIELSQA
CCCCCCCEEEECCCCCHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEHHHH
FSYAEACQVLTKENDFAIALVDVVMETEDAGLRLVRAIREVLGNEKIRIILLTGQPGMAP
HHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
IFDVMRDYDINDYWTKSELSADRLQTILTTNLRSYQQISSIANAKRGLQLIAESSGALYT
HHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEE
SRNIKELSGKMLRQLSQLLNLPHGGIVCVKSTGELTEQGISHQIIAASGEFEPYFGYALQ
CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCEEEEEECCCCCHHHHHHHH
QLEQQHIRAQLELCLSRRQSRIENDFTCLFFPDELAGADYSVYLATGRPLDITETELIRV
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCEEEEEECCCCCCCCHHHHHHH
FSMNICGGLHSVSLMSQLDKIAFEDPLVKIPNLNVLIRTLEGVLAEDIREKFNLLIIDID
HHHHHHCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
KFSDFNRVFGSPQGNEMLKHVACCLREHFDACVLVARLKDDKFAVLGPKTLVTADIISRL
CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHH
FIQPYQQGKSKITVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQAND
HHHHHHCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHCEEECCCC
DNVAYHFELLQSLQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFI
CCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEEHHHHHHCCCCCCCCCCCCCEE
PIAEATGLITQLGEQLFVQSCQALCALNEAGYTNLCMGVNLSAMQFEQENIVDILKQHIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHC
DANMPPGQIEVEVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFD
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHH
RIKIDKSFIDNVTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQG
HHEECHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
YFYAKPMPLPELLTWLKNYQKTPL
EEEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]