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The map label for this gene is nadB [C]

Identifier: 160873382

GI number: 160873382

Start: 295942

End: 297462

Strand: Direct

Name: nadB [C]

Synonym: Sbal195_0256

Alternate gene names: 160873382

Gene position: 295942-297462 (Clockwise)

Preceding gene: 160873381

Following gene: 160873383

Centisome position: 5.53

GC content: 46.02

Gene sequence:

>1521_bases
ATGAGTAATGCAAATCTGCTAGGACGCCGTAATTTCATCAAAGGTTTAGGTGCCGCTACTGGCGTAGCAATGGTATCGCC
TGTGATGGCAGTTTCTGAGAAAGCTGACGGTATTAAGTGGGATAAAGAGATTGAAATTCTAATCGTGGGTTCAGGTTTTT
CTGGATTAGCGGCTGCAATTGAAGCGACGCGCAAGGGCGCAAAAGATGTACACATTTTCGAGAAAATGTCTTACTTCGGT
GGTAATTCTGCAATCAATGGGGGTTTATTCGCAGCCCCAGGCACACCAATGCAGAAAAAAGAAGGAGTGGAAGATTCAGT
TGAAAAAATGGTTGCGGATCAAATTGCCTCTGGCCGCGGTATTGCTGACGAGAGCTTATTACGGCATGTGGCTTCACATG
CCGTAGAGGCGCTGCAAATGACGTTGGATGCTGGAGCTGAATTTCATCCATATTTGCAGCAATTAGGTGGTCATTCTGTT
GCTCGAACTTACCAAACGAGCGTGAGTTGTGGTGCCGGTATTACGCAACCACTCTTAAAAGAGTGCCGCCGATTGGGTGT
AAAGACCCATAACCGCGCTAAGTTCGAAGGCTTTTTATTGGGTGATAAGGGTAATGTTGTCGGCGTGAAAATGCGTGAAA
ACTATCACTTTGGTGAGGATCAGCCTGGAAAAGTGCTAAATATTCGCACAAAACGTGGCGTGATTATGGCGACTGGAGGG
TTTGCTCAAAATATCGATTTTCGTATGGCACAAGATCCGACACTGACCTCTGAAGTAGGTTGTACCAATGCGCCTGGCGC
TACCGGTGAGGGCATGTTGGAAATGTTCCGTTTAGGGGCTGTACCTGTCCATCTTGCCCATATCCAATCTGGACCATGGG
CTTCGCCTGATGAAGGCGGCTTTGGCTATGTATCTAATTATTCAATTTTTAACTTTCCTCATTCAATTGCCATTAACTGT
ATGACAGGTAAACGCTTTATGGATGAGATTGCGGACCGGAAAACGCGTGCGGATGCTGAGTTGGCATGTCGTGATGCTAA
AGGTGAACCGCTTCCTCCCATTTTAATTACGAGCTTTAAAGACTCTAAGCAGCATCCTAATACTGCCAAAGTACTTAAAT
ATAACGTGGGTTGGAAGTTCGACACTCTTGAGGAATTAGCGAAACACTTTGGCGTACCACTCGAGTCATTAAAAGCGCAG
ATTGAAGAATACAACAGCTATGTCAAAACGGGTGTTGATAAGCAATTTAGCAAGAACATGACAAAAGCTAAGGATAAATA
TATTGAAGCACCATTTACCGTAGTTCGTTTATGGCCAAAAGTGCATTACTGCCAAGGTGGTGTGCAGGTCAATACTAAGG
CGGAAGTGAAAGACAGCCTTACGGGTCAGCCTATCCCAGGTTTGTATGCTGCTGGCGAAGTCTGCGGCGGTATTCACGGC
GTTAGCCGTTTGGGTAGCTGCTCAATTCCAGAATGTATGGTGATGGGTATGACTGCCGCCCGTAGCATGATGCAAGCCTA
A

Upstream 100 bases:

>100_bases
GTTTATTTGTAGCGGAGGCAACTCTTGATGCACTCACGTTTTGGAATGCATTCCATCGTTATGATGTTTATGTCTATTAA
AACAACAAAGGTGATGACAG

Downstream 100 bases:

>100_bases
GTGGCCAGTAAATAAGAGGAATCAATAATGAAAATGCTAAATATTGTACTCGCGCTGGTCTTAGTCGGCTTGGTGAGTCT
ATCTGCTCAAGCCGTTGAGC

Product: flavocytochrome c

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSNANLLGRRNFIKGLGAATGVAMVSPVMAVSEKADGIKWDKEIEILIVGSGFSGLAAAIEATRKGAKDVHIFEKMSYFG
GNSAINGGLFAAPGTPMQKKEGVEDSVEKMVADQIASGRGIADESLLRHVASHAVEALQMTLDAGAEFHPYLQQLGGHSV
ARTYQTSVSCGAGITQPLLKECRRLGVKTHNRAKFEGFLLGDKGNVVGVKMRENYHFGEDQPGKVLNIRTKRGVIMATGG
FAQNIDFRMAQDPTLTSEVGCTNAPGATGEGMLEMFRLGAVPVHLAHIQSGPWASPDEGGFGYVSNYSIFNFPHSIAINC
MTGKRFMDEIADRKTRADAELACRDAKGEPLPPILITSFKDSKQHPNTAKVLKYNVGWKFDTLEELAKHFGVPLESLKAQ
IEEYNSYVKTGVDKQFSKNMTKAKDKYIEAPFTVVRLWPKVHYCQGGVQVNTKAEVKDSLTGQPIPGLYAAGEVCGGIHG
VSRLGSCSIPECMVMGMTAARSMMQA

Sequences:

>Translated_506_residues
MSNANLLGRRNFIKGLGAATGVAMVSPVMAVSEKADGIKWDKEIEILIVGSGFSGLAAAIEATRKGAKDVHIFEKMSYFG
GNSAINGGLFAAPGTPMQKKEGVEDSVEKMVADQIASGRGIADESLLRHVASHAVEALQMTLDAGAEFHPYLQQLGGHSV
ARTYQTSVSCGAGITQPLLKECRRLGVKTHNRAKFEGFLLGDKGNVVGVKMRENYHFGEDQPGKVLNIRTKRGVIMATGG
FAQNIDFRMAQDPTLTSEVGCTNAPGATGEGMLEMFRLGAVPVHLAHIQSGPWASPDEGGFGYVSNYSIFNFPHSIAINC
MTGKRFMDEIADRKTRADAELACRDAKGEPLPPILITSFKDSKQHPNTAKVLKYNVGWKFDTLEELAKHFGVPLESLKAQ
IEEYNSYVKTGVDKQFSKNMTKAKDKYIEAPFTVVRLWPKVHYCQGGVQVNTKAEVKDSLTGQPIPGLYAAGEVCGGIHG
VSRLGSCSIPECMVMGMTAARSMMQA
>Mature_505_residues
SNANLLGRRNFIKGLGAATGVAMVSPVMAVSEKADGIKWDKEIEILIVGSGFSGLAAAIEATRKGAKDVHIFEKMSYFGG
NSAINGGLFAAPGTPMQKKEGVEDSVEKMVADQIASGRGIADESLLRHVASHAVEALQMTLDAGAEFHPYLQQLGGHSVA
RTYQTSVSCGAGITQPLLKECRRLGVKTHNRAKFEGFLLGDKGNVVGVKMRENYHFGEDQPGKVLNIRTKRGVIMATGGF
AQNIDFRMAQDPTLTSEVGCTNAPGATGEGMLEMFRLGAVPVHLAHIQSGPWASPDEGGFGYVSNYSIFNFPHSIAINCM
TGKRFMDEIADRKTRADAELACRDAKGEPLPPILITSFKDSKQHPNTAKVLKYNVGWKFDTLEELAKHFGVPLESLKAQI
EEYNSYVKTGVDKQFSKNMTKAKDKYIEAPFTVVRLWPKVHYCQGGVQVNTKAEVKDSLTGQPIPGLYAAGEVCGGIHGV
SRLGSCSIPECMVMGMTAARSMMQA

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=490, Percent_Identity=28.7755102040816, Blast_Score=117, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6320788, Length=483, Percent_Identity=27.9503105590062, Blast_Score=141, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6322511, Length=478, Percent_Identity=26.5690376569038, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 54555; Mature: 54424

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNANLLGRRNFIKGLGAATGVAMVSPVMAVSEKADGIKWDKEIEILIVGSGFSGLAAAI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHH
EATRKGAKDVHIFEKMSYFGGNSAINGGLFAAPGTPMQKKEGVEDSVEKMVADQIASGRG
HHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCC
IADESLLRHVASHAVEALQMTLDAGAEFHPYLQQLGGHSVARTYQTSVSCGAGITQPLLK
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHH
ECRRLGVKTHNRAKFEGFLLGDKGNVVGVKMRENYHFGEDQPGKVLNIRTKRGVIMATGG
HHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECC
FAQNIDFRMAQDPTLTSEVGCTNAPGATGEGMLEMFRLGAVPVHLAHIQSGPWASPDEGG
CCCCCCEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
FGYVSNYSIFNFPHSIAINCMTGKRFMDEIADRKTRADAELACRDAKGEPLPPILITSFK
CCEEECCEEEECCCEEEEEEECCHHHHHHHHHHHHCCCHHHHEECCCCCCCCCEEEECCC
DSKQHPNTAKVLKYNVGWKFDTLEELAKHFGVPLESLKAQIEEYNSYVKTGVDKQFSKNM
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
TKAKDKYIEAPFTVVRLWPKVHYCQGGVQVNTKAEVKDSLTGQPIPGLYAAGEVCGGIHG
HHHHHHHHCCCCEEEHHCCHHEEECCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VSRLGSCSIPECMVMGMTAARSMMQA
HHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNANLLGRRNFIKGLGAATGVAMVSPVMAVSEKADGIKWDKEIEILIVGSGFSGLAAAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHH
EATRKGAKDVHIFEKMSYFGGNSAINGGLFAAPGTPMQKKEGVEDSVEKMVADQIASGRG
HHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCC
IADESLLRHVASHAVEALQMTLDAGAEFHPYLQQLGGHSVARTYQTSVSCGAGITQPLLK
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHH
ECRRLGVKTHNRAKFEGFLLGDKGNVVGVKMRENYHFGEDQPGKVLNIRTKRGVIMATGG
HHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECC
FAQNIDFRMAQDPTLTSEVGCTNAPGATGEGMLEMFRLGAVPVHLAHIQSGPWASPDEGG
CCCCCCEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
FGYVSNYSIFNFPHSIAINCMTGKRFMDEIADRKTRADAELACRDAKGEPLPPILITSFK
CCEEECCEEEECCCEEEEEEECCHHHHHHHHHHHHCCCHHHHEECCCCCCCCCEEEECCC
DSKQHPNTAKVLKYNVGWKFDTLEELAKHFGVPLESLKAQIEEYNSYVKTGVDKQFSKNM
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
TKAKDKYIEAPFTVVRLWPKVHYCQGGVQVNTKAEVKDSLTGQPIPGLYAAGEVCGGIHG
HHHHHHHHCCCCEEEHHCCHHEEECCCEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VSRLGSCSIPECMVMGMTAARSMMQA
HHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]