Definition | Shewanella baltica OS195 chromosome, complete genome. |
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Accession | NC_009997 |
Length | 5,347,283 |
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The map label for this gene is cytR [H]
Identifier: 160873191
GI number: 160873191
Start: 74927
End: 75958
Strand: Direct
Name: cytR [H]
Synonym: Sbal195_0065
Alternate gene names: 160873191
Gene position: 74927-75958 (Clockwise)
Preceding gene: 160873190
Following gene: 160873193
Centisome position: 1.4
GC content: 49.13
Gene sequence:
>1032_bases ATGACAACAACAAAACACTGGACCCTAAAGAGCATAGCCAATGAGTTGGGTGTCTCTAATGCCACTGTTTCTAACGCGTT TAATCGCCCCGACCAATTATCGGAAAAACGTCGTAACGATATTTTAGCTGCCTGCACTAAGTTAGGATATTTCGGGCCAA ATAAAGCGGCTCAATCCCTACGTAAGGGCAAGTTCGATACTGTCGCCTTGGTACTGTCGGACAGCGTGGAATACATGGTG TCCGATCCCGTCGCCAGTAAATTTATGAAGGGCGTGGCCTCTGTCTTGGAGCAAGAGAAACTCAATTTGCTGCTGTTTTC GGGCAGTTCAGACAGCGTGAATGCGGTGGCCGACTTTGTGGATGGTTTTATTTGTTATGGTCGCCCGCGCAATGCCCTGT TGGCCGAGCAGTTAAAGCAGGTTAAGAAAAAGGTCGTCACGGTCGATTTTGATATCCACCGCAATGCATCTGTGAGCATA GACAATAAGTTAGCTGCCTATGAAGTAGCGAAACTGGCATTGCAGTCGCCCGCGGACAATGTGGCCATTTTGGGGCTACG TTTGCTTGATACCCACTTAACTTGCCGCGTTTATGATTTGAATTTGTTAGAAATCGACACCTCTGTTGCCCATCAAAGAT TACAGGGTTACTTGCAAGCGATTGAAGAAGTGGGCGTTGTACTGGGGCAGGACCGCATTTGGAATATCCCCGAAAGCAAT GCCGACTATGCGGCGATAGCGGCCAAAGAAGCGCTGAACTCGACCCCACGGCCGAATGTGTTTTTATGCATGAGTGACTT AATCGCCTTGAGTGTGCTCGGTGAGGCGCAGGCTATGGGGCTGAATGTTCCCGAAGATGTGCGAGTAGTGGGCTTTGATG GTATAGATGAAGGCACACGTTCAAATCCGCCGTTAACGACTGTCTATCAATACTCTGAGCAGAAGGGCCGAAAAGCGGCG CAAATGTTTGTCAGTGATGCCGTGCATGCGGAAGTCTTGGGCTATGAATTACGTCTCGGTAAGAGCTGCTAA
Upstream 100 bases:
>100_bases CGCATTAAGCCTAGATTTGCAGGTGCACGACCCATTTAAGCCGTGTACTATTTGCGCTGAGCCGTATTTTTGTGGCCTTA TTCGATTCCAGGACATAAGC
Downstream 100 bases:
>100_bases TCGCTACATCTTTTAACTAAAAAAGGCGCAATGAATGCGCCTTTTTGCTATCTCAACACTATGCCGCTTAGCTTGAACTT AAACCCAAACTCAAGCTCAA
Product: LacI family transcription regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MTTTKHWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNDILAACTKLGYFGPNKAAQSLRKGKFDTVALVLSDSVEYMV SDPVASKFMKGVASVLEQEKLNLLLFSGSSDSVNAVADFVDGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSI DNKLAAYEVAKLALQSPADNVAILGLRLLDTHLTCRVYDLNLLEIDTSVAHQRLQGYLQAIEEVGVVLGQDRIWNIPESN ADYAAIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLNVPEDVRVVGFDGIDEGTRSNPPLTTVYQYSEQKGRKAA QMFVSDAVHAEVLGYELRLGKSC
Sequences:
>Translated_343_residues MTTTKHWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNDILAACTKLGYFGPNKAAQSLRKGKFDTVALVLSDSVEYMV SDPVASKFMKGVASVLEQEKLNLLLFSGSSDSVNAVADFVDGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSI DNKLAAYEVAKLALQSPADNVAILGLRLLDTHLTCRVYDLNLLEIDTSVAHQRLQGYLQAIEEVGVVLGQDRIWNIPESN ADYAAIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLNVPEDVRVVGFDGIDEGTRSNPPLTTVYQYSEQKGRKAA QMFVSDAVHAEVLGYELRLGKSC >Mature_342_residues TTTKHWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNDILAACTKLGYFGPNKAAQSLRKGKFDTVALVLSDSVEYMVS DPVASKFMKGVASVLEQEKLNLLLFSGSSDSVNAVADFVDGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSID NKLAAYEVAKLALQSPADNVAILGLRLLDTHLTCRVYDLNLLEIDTSVAHQRLQGYLQAIEEVGVVLGQDRIWNIPESNA DYAAIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLNVPEDVRVVGFDGIDEGTRSNPPLTTVYQYSEQKGRKAAQ MFVSDAVHAEVLGYELRLGKSC
Specific function: This protein negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins. Binds cytidine and adenosine as effectors [H]
COG id: COG1609
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790369, Length=348, Percent_Identity=26.4367816091954, Blast_Score=108, Evalue=7e-25, Organism=Escherichia coli, GI1787948, Length=343, Percent_Identity=23.3236151603499, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI48994940, Length=351, Percent_Identity=23.9316239316239, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787580, Length=300, Percent_Identity=23, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790715, Length=358, Percent_Identity=23.463687150838, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000843 - InterPro: IPR010982 - InterPro: IPR001761 [H]
Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 37427; Mature: 37296
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: PS50932 HTH_LACI_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTKHWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNDILAACTKLGYFGPNKAAQSL CCCCCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RKGKFDTVALVLSDSVEYMVSDPVASKFMKGVASVLEQEKLNLLLFSGSSDSVNAVADFV HCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH DGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSIDNKLAAYEVAKLALQSPADN CCEEEECCCCCHHHHHHHHHHHHHEEEEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCC VAILGLRLLDTHLTCRVYDLNLLEIDTSVAHQRLQGYLQAIEEVGVVLGQDRIWNIPESN EEEEHHHHCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC ADYAAIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLNVPEDVRVVGFDGIDEGTR CCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCCCC SNPPLTTVYQYSEQKGRKAAQMFVSDAVHAEVLGYELRLGKSC CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC >Mature Secondary Structure TTTKHWTLKSIANELGVSNATVSNAFNRPDQLSEKRRNDILAACTKLGYFGPNKAAQSL CCCCCCHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RKGKFDTVALVLSDSVEYMVSDPVASKFMKGVASVLEQEKLNLLLFSGSSDSVNAVADFV HCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH DGFICYGRPRNALLAEQLKQVKKKVVTVDFDIHRNASVSIDNKLAAYEVAKLALQSPADN CCEEEECCCCCHHHHHHHHHHHHHEEEEEEEECCCCCEEECCHHHHHHHHHHHHHCCCCC VAILGLRLLDTHLTCRVYDLNLLEIDTSVAHQRLQGYLQAIEEVGVVLGQDRIWNIPESN EEEEHHHHCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC ADYAAIAAKEALNSTPRPNVFLCMSDLIALSVLGEAQAMGLNVPEDVRVVGFDGIDEGTR CCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCCCC SNPPLTTVYQYSEQKGRKAAQMFVSDAVHAEVLGYELRLGKSC CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]