Click here to switch to the map view.

The map label for this gene is slrR

Identifier: 16080491

GI number: 16080491

Start: 3530101

End: 3530559

Strand: Direct

Name: slrR

Synonym: BSU34380

Alternate gene names: 16080491

Gene position: 3530101-3530559 (Clockwise)

Preceding gene: 16080474

Following gene: 16080492

Centisome position: 83.74

GC content: 40.96

Gene sequence:

>459_bases
ATGATTGGAAGAATTATCCGTTTGTACCGTAAAAGAAAAGGCTATTCTATTAATCAGCTGGCTGTTGAGTCAGGCGTATC
CAAATCCTATTTAAGCAAGATTGAAAGAGGCGTTCACACGAATCCGTCCGTTCAATTTTTAAAAAAAGTTTCTGCCACAC
TGGAAGTTGAATTAACAGAATTATTTGACGCAGAAACAATGATGTATGAAAAAATCAGCGGCGGTGAAGAAGAATGGCGC
GTACATTTAGTGCAAGCCGTACAAGCCGGGATGGAAAAGGAAGAATTGTTCACTTTTACGAACAGACTCAAGAAAGAACA
GCCTGAAACTGCCTCTTACCGCAACCGCAAACTGACGGAATCCAATATAGAAGAATGGAAAGCGCTGATGGCGGAGGCAA
GAGAAATCGGCTTGTCTGTCCATGAAGTCAAATCCTTTTTAAAAACAAAGGGAAGATGA

Upstream 100 bases:

>100_bases
TAATTTACTGCACTTCCCTTATTATTTTAAATTTTATAAAGAACGAAAAATTCCTTATAATGAACGAAATAACGACAGGA
ATAGAGGAGAATTTCATATT

Downstream 100 bases:

>100_bases
TGATCGGTTAAAGGGCTAACGTTCGCATCTATAGGGGAAATCTGTTTATAATGGGGGAAAAAGGGAGAGAACACAATGAC
TCATCAAATAGTAACGACTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTELFDAETMMYEKISGGEEEWR
VHLVQAVQAGMEKEELFTFTNRLKKEQPETASYRNRKLTESNIEEWKALMAEAREIGLSVHEVKSFLKTKGR

Sequences:

>Translated_152_residues
MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTELFDAETMMYEKISGGEEEWR
VHLVQAVQAGMEKEELFTFTNRLKKEQPETASYRNRKLTESNIEEWKALMAEAREIGLSVHEVKSFLKTKGR
>Mature_152_residues
MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTELFDAETMMYEKISGGEEEWR
VHLVQAVQAGMEKEELFTFTNRLKKEQPETASYRNRKLTESNIEEWKALMAEAREIGLSVHEVKSFLKTKGR

Specific function: Represses sigma(D)-dependent flagellar genes and activate the eps and yqxM operons. Repressor activity is regulated by slrA. Controls the initiation of biofilm formation

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Sin domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLRR_BACSU (P71049)

Other databases:

- EMBL:   Z71928
- EMBL:   U46134
- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   E69708
- RefSeq:   NP_391318.1
- HSSP:   P06533
- ProteinModelPortal:   P71049
- SMR:   P71049
- EnsemblBacteria:   EBBACT00000002249
- GeneID:   938581
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34380
- NMPDR:   fig|224308.1.peg.3444
- GenoList:   BSU34380
- GeneTree:   EBGT00050000000697
- HOGENOM:   HBG727458
- OMA:   KGYSINQ
- ProtClustDB:   CLSK887918
- BioCyc:   BSUB:BSU34380-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR012288
- InterPro:   IPR010981
- Gene3D:   G3DSA:1.10.287.270
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; PF08671 SinI; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 17570; Mature: 17570

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50943 HTH_CROC1; PS51500 SIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE
CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LFDAETMMYEKISGGEEEWRVHLVQAVQAGMEKEELFTFTNRLKKEQPETASYRNRKLTE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCH
SNIEEWKALMAEAREIGLSVHEVKSFLKTKGR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE
CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LFDAETMMYEKISGGEEEWRVHLVQAVQAGMEKEELFTFTNRLKKEQPETASYRNRKLTE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCH
SNIEEWKALMAEAREIGLSVHEVKSFLKTKGR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377