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The map label for this gene is yvaA

Identifier: 16080406

GI number: 16080406

Start: 3444329

End: 3445405

Strand: Direct

Name: yvaA

Synonym: BSU33530

Alternate gene names: 16080406

Gene position: 3444329-3445405 (Clockwise)

Preceding gene: 16080394

Following gene: 16080417

Centisome position: 81.7

GC content: 45.5

Gene sequence:

>1077_bases
TTGATAACGCTTTTAAAGGGGAGAAGAAAAGTGGATACGATCAAGGTTGGAATATTAGGATACGGATTGTCCGGTTCTGT
TTTTCACGGGCCGCTGCTGGATGTTCTGGATGAATATCAAATCAGCAAAATCATGACATCACGGACAGAAGAAGTGAAAC
GGGATTTTCCAGATGCTGAGGTTGTACATGAGCTTGAAGAAATCACAAATGACCCTGCCATTGAGCTTGTCATTGTCACC
ACCCCGAGCGGCCTTCATTACGAGCATACTATGGCATGCATACAGGCCGGAAAACATGTTGTGATGGAAAAACCAATGAC
AGCAACGGCCGAAGAGGGGGAAACATTAAAAAGGGCTGCCGATGAAAAAGGCGTATTATTAAGCGTATATCATAACCGAC
GCTGGGATAACGATTTTTTAACGATTAAAAAGCTGATCTCTGAGGGATCCCTTGAAGATATCAATACATATCAAGTTTCC
TATAACCGCTACAGACCTGAAGTTCAAGCGCGGTGGCGGGAAAAAGAAGGCACTGCCACTGGTACGCTGTATGATCTCGG
CTCCCACATCATAGACCAAACCCTGCATTTGTTTGGGATGCCTAAAGCCGTGACTGCAAACGTGATGGCCCAGCGGGAAA
ATGCCGAAACGGTTGACTATTTTCATTTAACCCTGGATTATGGCAAGCTTCAAGCCATTCTATACGGAGGATCAATCGTT
CCGGCAAACGGACCTCGTTATCAAATCCATGGAAAAGATTCTAGCTTTATCAAATATGGAATTGACGGACAGGAAGACGC
ACTCAGAGCGGGAAGAAAACCAGAGGATGACAGCTGGGGTGCGGATGTTCCGGAGTTTTACGGAAAGCTTACAACCATTC
GTGGCTCCGACAAAAAAACAGAAACGATTCCATCAGTAAATGGCTCCTACCTTACTTATTACCGTAAAATAGCGGAAAGC
ATACGAGAAGGTGCTGCGCTGCCAGTCACTGCTGAGGAAGGTATTAATGTCATCCGCATCATTGAAGCCGCGATGGAAAG
CAGTAAAGAGAAACGAACCATTATGCTGGAGCACTAA

Upstream 100 bases:

>100_bases
TTCCCATTATACTGATTGTCCAAACGGTTGTCTAAGCATGCCGACGCAAAAAATGAATCAGTTAGGTTTTACCATTTGAT
CAGGAGGGTATATACTTCTG

Downstream 100 bases:

>100_bases
AACAAAAGCCTCCCCAAATAAGGGGAGGCTTTTTCATTAGAATGTTTTTCCTGCTTCTTTCGCACGCGCAATCGCGTCTT
CTTTGATTTGCTGTGCTTTA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MITLLKGRRKVDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVT
TPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVS
YNRYRPEVQARWREKEGTATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIV
PANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAES
IREGAALPVTAEEGINVIRIIEAAMESSKEKRTIMLEH

Sequences:

>Translated_358_residues
MITLLKGRRKVDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVT
TPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVS
YNRYRPEVQARWREKEGTATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIV
PANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAES
IREGAALPVTAEEGINVIRIIEAAMESSKEKRTIMLEH
>Mature_358_residues
MITLLKGRRKVDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVT
TPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVS
YNRYRPEVQARWREKEGTATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIV
PANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAES
IREGAALPVTAEEGINVIRIIEAAMESSKEKRTIMLEH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family

Homologues:

Organism=Escherichia coli, GI87081947, Length=345, Percent_Identity=38.5507246376812, Blast_Score=276, Evalue=1e-75,
Organism=Escherichia coli, GI1789848, Length=339, Percent_Identity=32.4483775811209, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787574, Length=209, Percent_Identity=23.444976076555, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082405, Length=271, Percent_Identity=25.830258302583, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVAA_BACSU (O32223)

Other databases:

- EMBL:   AL009126
- PIR:   G70026
- RefSeq:   NP_391233.1
- PDB:   3GDO
- PDB:   3GFG
- PDBsum:   3GDO
- PDBsum:   3GFG
- ProteinModelPortal:   O32223
- SMR:   O32223
- EnsemblBacteria:   EBBACT00000002952
- GeneID:   936109
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33530
- NMPDR:   fig|224308.1.peg.3359
- GenoList:   BSU33530
- GeneTree:   EBGT00050000000829
- HOGENOM:   HBG322267
- OMA:   QNRRWDN
- PhylomeDB:   O32223
- ProtClustDB:   CLSK887882
- BioCyc:   BSUB:BSU33530-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C

EC number: 1.-.-.- [C]

Molecular weight: Translated: 40113; Mature: 40113

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITLLKGRRKVDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAE
CEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
VVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAA
HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHC
DEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEVQARWREKEGTAT
CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHCCCHHHHHHHHCCCCCC
GTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIV
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCEEE
PANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKT
CCCCCEEEEECCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
ETIPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMESSKEKRTIMLEH
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHCCCHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MITLLKGRRKVDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAE
CEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
VVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAA
HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHC
DEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEVQARWREKEGTAT
CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHCCCHHHHHHHHCCCCCC
GTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIV
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCEEE
PANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKT
CCCCCEEEEECCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
ETIPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMESSKEKRTIMLEH
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHCCCHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377