BacMap

Definition	Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome.
Accession	NC_000964
Length	4,215,606

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The map label for this gene is yvrD

Identifier: 16080372

GI number: 16080372

Start: 3404835

End: 3405626

Strand: Direct

Name: yvrD

Synonym: BSU33190

Alternate gene names: 16080372

Gene position: 3404835-3405626 (Clockwise)

Preceding gene: 16080360

Following gene: 255767761

Centisome position: 80.77

GC content: 48.86

Gene sequence:

>792_bases
ATGGATTTACAGCTAAAAGAAAAACTCGTCTTAATCACCGGCTCGACGTCCGGTATCGGGAAAGCCGCCGCAAAAAGCTT
TCTGCAAGAGGGTGCGGCAGTCATTGTCAACGGACGCAAACAGGAGACTGTCGATCGCACCATTGAAGAGCTTTCTGGCT
ATGGAACAGTGCACGGTGCTGCTGCCGATTTGTCAAAAACAGATGAAGCAGCGGCTTTTATCGAAAAAGTAAATGAAATC
GGTGATATCGATATCCTTGTCAACAACCTTGGTTTCTTCGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAA
TCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAACAGCG
GCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCA
CTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAATGTGACGGTCAACTCAGTGCTCCCGGGACCTAC
TTGGACAGAGGGCGTGGCCTCCTATATGGAAGGCGCCGCACAAGCAGCCGGACAGGATACAGATACATTTATCAAAGACT
ATTTCAAGGTCAATGAGCCAACCTCACTTATTCAGCGATACGCGACAGCAGAAGAAGTCGCCAACACAATCGTATTCCTC
GCGTCTGACGCCGCATCCGCCATTAACGGCACGGCACAGCGTGTGGAAGGCGGCATTATCCGTTCTCTGTAG

Upstream 100 bases:

>100_bases
ATGACTTTTCCCCATATTGTGTATGGAAGCAAAATCCTCGTAAACACTAAATTTGATCTTGTATACTTAATACCATCATC
TATCAAAAGGAATGATTCTT

Downstream 100 bases:

>100_bases
TATAAAAAAACGCATCCGTGTTTCGGATGCGTTTTTTTTATACGTCTCCAGCAAATGGTACCGGCTGATATCCGCCTGTT
TCCAGTTGTGCTGAAAACAA

Product: oxidoreductase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDLQLKEKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQETVDRTIEELSGYGTVHGAAADLSKTDEAAAFIEKVNEI
GDIDILVNNLGFFEVKDFADVTDEEWNQYFEVNVMSAVRTSRHFLPKMLAKNSGRILNIASEAGVKPLPTMIPYSMTKTA
LISLSRGMAEMTKGTNVTVNSVLPGPTWTEGVASYMEGAAQAAGQDTDTFIKDYFKVNEPTSLIQRYATAEEVANTIVFL
ASDAASAINGTAQRVEGGIIRSL

Sequences:

>Translated_263_residues
MDLQLKEKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQETVDRTIEELSGYGTVHGAAADLSKTDEAAAFIEKVNEI
GDIDILVNNLGFFEVKDFADVTDEEWNQYFEVNVMSAVRTSRHFLPKMLAKNSGRILNIASEAGVKPLPTMIPYSMTKTA
LISLSRGMAEMTKGTNVTVNSVLPGPTWTEGVASYMEGAAQAAGQDTDTFIKDYFKVNEPTSLIQRYATAEEVANTIVFL
ASDAASAINGTAQRVEGGIIRSL
>Mature_263_residues
MDLQLKEKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQETVDRTIEELSGYGTVHGAAADLSKTDEAAAFIEKVNEI
GDIDILVNNLGFFEVKDFADVTDEEWNQYFEVNVMSAVRTSRHFLPKMLAKNSGRILNIASEAGVKPLPTMIPYSMTKTA
LISLSRGMAEMTKGTNVTVNSVLPGPTWTEGVASYMEGAAQAAGQDTDTFIKDYFKVNEPTSLIQRYATAEEVANTIVFL
ASDAASAINGTAQRVEGGIIRSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family

Homologues:

Organism=Homo sapiens, GI32483357, Length=260, Percent_Identity=30.7692307692308, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=28.9156626506024, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI210032110, Length=163, Percent_Identity=31.9018404907975, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=32.6086956521739, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=27.4809160305344, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI142976729, Length=173, Percent_Identity=30.635838150289, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=27.0833333333333, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40807363, Length=157, Percent_Identity=31.8471337579618, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI7705855, Length=190, Percent_Identity=31.5789473684211, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=26.5625, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI19923817, Length=277, Percent_Identity=25.6317689530686, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI210032112, Length=161, Percent_Identity=27.3291925465839, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI109715829, Length=190, Percent_Identity=27.3684210526316, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20149619, Length=167, Percent_Identity=31.1377245508982, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI10190704, Length=264, Percent_Identity=24.6212121212121, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226371731, Length=181, Percent_Identity=26.5193370165746, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31543615, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40254992, Length=255, Percent_Identity=25.0980392156863, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=26.9911504424779, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4503817, Length=198, Percent_Identity=26.7676767676768, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI15277342, Length=267, Percent_Identity=24.3445692883895, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=30.2325581395349, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787335, Length=260, Percent_Identity=31.5384615384615, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790717, Length=263, Percent_Identity=30.4182509505703, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=29.0076335877863, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=30.3501945525292, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789208, Length=268, Percent_Identity=28.7313432835821, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787905, Length=264, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87082160, Length=267, Percent_Identity=26.9662921348315, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=32.7868852459016, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=30.1960784313725, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI2367365, Length=252, Percent_Identity=28.1746031746032, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367175, Length=260, Percent_Identity=30, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=260, Percent_Identity=30.3846153846154, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=29.8449612403101, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=28.4584980237154, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=28.2945736434109, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17508895, Length=226, Percent_Identity=33.6283185840708, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=31.1111111111111, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=29.3233082706767, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=253, Percent_Identity=32.4110671936759, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=257, Percent_Identity=28.4046692607004, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=254, Percent_Identity=31.1023622047244, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI25147288, Length=269, Percent_Identity=26.3940520446097, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17564282, Length=186, Percent_Identity=31.7204301075269, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=31.4393939393939, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=248, Percent_Identity=29.8387096774194, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=29.8449612403101, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=267, Percent_Identity=27.7153558052434, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=29.5454545454545, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=30.2583025830258, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=204, Percent_Identity=28.4313725490196, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=30.6513409961686, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=273, Percent_Identity=29.6703296703297, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=31.0606060606061, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=278, Percent_Identity=29.136690647482, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=162, Percent_Identity=32.7160493827161, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=32.6996197718631, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=28.6821705426357, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI86565303, Length=225, Percent_Identity=28, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=149, Percent_Identity=29.5302013422819, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=187, Percent_Identity=34.2245989304813, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=24.0458015267176, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17542178, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=257, Percent_Identity=30.7392996108949, Blast_Score=89, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=30.5699481865285, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=28.8770053475936, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=31.1023622047244, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=29.1828793774319, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=29.1828793774319, Blast_Score=104, Evalue=7e-23,
Organism=Drosophila melanogaster, GI21355319, Length=263, Percent_Identity=29.6577946768061, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=28.515625, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=27.9527559055118, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=32.3699421965318, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24640492, Length=183, Percent_Identity=29.5081967213115, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24584748, Length=179, Percent_Identity=31.2849162011173, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI161076933, Length=179, Percent_Identity=31.2849162011173, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24584744, Length=179, Percent_Identity=30.7262569832402, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28574402, Length=179, Percent_Identity=30.7262569832402, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=30.1158301158301, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI18859837, Length=202, Percent_Identity=27.2277227722772, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21358495, Length=215, Percent_Identity=26.9767441860465, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221510726, Length=190, Percent_Identity=30.5263157894737, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581726, Length=164, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355631, Length=164, Percent_Identity=30.4878048780488, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=30, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=28.8770053475936, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVRD_BACSU (O34782)

Other databases:

- EMBL:   AJ223978
- EMBL:   AL009126
- PIR:   H70046
- RefSeq:   NP_391199.1
- HSSP:   P16544
- ProteinModelPortal:   O34782
- SMR:   O34782
- EnsemblBacteria:   EBBACT00000003381
- GeneID:   938584
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33190
- NMPDR:   fig|224308.1.peg.3325
- GenoList:   BSU33190
- GeneTree:   EBGT00070000031990
- HOGENOM:   HBG750976
- OMA:   TWTEGVA
- ProtClustDB:   CLSK2301482
- BioCyc:   BSUB:BSU33190-MONOMER
- GO:   GO:0005488
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR19410
- PRINTS:   PR00081
- PRINTS:   PR00080

Pfam domain/function: PF00106 adh_short

EC number: 1.1.1.100

Molecular weight: Translated: 28222; Mature: 28222

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00061 ADH_SHORT

Important sites: ACT_SITE 154-154 BINDING 141-141

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQLKEKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQETVDRTIEELSGYGTVHGA
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCC
AADLSKTDEAAAFIEKVNEIGDIDILVNNLGFFEVKDFADVTDEEWNQYFEVNVMSAVRT
HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHCCCHHHHHHEEEHHHHHHHHH
SRHFLPKMLAKNSGRILNIASEAGVKPLPTMIPYSMTKTALISLSRGMAEMTKGTNVTVN
HHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
SVLPGPTWTEGVASYMEGAAQAAGQDTDTFIKDYFKVNEPTSLIQRYATAEEVANTIVFL
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEE
ASDAASAINGTAQRVEGGIIRSL
ECCHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MDLQLKEKLVLITGSTSGIGKAAAKSFLQEGAAVIVNGRKQETVDRTIEELSGYGTVHGA
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCC
AADLSKTDEAAAFIEKVNEIGDIDILVNNLGFFEVKDFADVTDEEWNQYFEVNVMSAVRT
HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHCCCHHHHHHEEEHHHHHHHHH
SRHFLPKMLAKNSGRILNIASEAGVKPLPTMIPYSMTKTALISLSRGMAEMTKGTNVTVN
HHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
SVLPGPTWTEGVASYMEGAAQAAGQDTDTFIKDYFKVNEPTSLIQRYATAEEVANTIVFL
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEE
ASDAASAINGTAQRVEGGIIRSL
ECCHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377