Click here to switch to the map view.

The map label for this gene is ytlD

Identifier: 16080114

GI number: 16080114

Start: 3134144

End: 3134956

Strand: Direct

Name: ytlD

Synonym: BSU30620

Alternate gene names: 16080114

Gene position: 3134144-3134956 (Clockwise)

Preceding gene: 16080113

Following gene: 255767700

Centisome position: 74.35

GC content: 46.25

Gene sequence:

>813_bases
TTGAGAAACAGCAAAGAAACCATTGATCTGCTTCACGAGCAGTATCAATTCAAACAGAAAAAGGAAAAGTGGAAGGTCCA
TTCCTTTCAGCTTGCCATATTTATTCTCTTTTTCTCGGGCTGGGAAATCTCCAGCAGGCAGGGCTGGATCGATCCGCTGA
TCTTCAGCTCTCCATCAGCTGTGTGGCGATTATTGCTGGAGAAACTTGGTGACGGTTCTTTACTGTCACACATCGGCGTC
ACTTTATTTGAAACGGTGCTTGGCTTTTTGCTCGGGACGTTTATGGGCACGTGCCTAGCCGCTTTGTTATGGTGGTCTAA
CCGACTTGCCAGAATTTTAGATCCGTATCTTGTGATTTTGAACGCAATGCCGAAAGTGGCCCTGGGCCCGATCCTGATTG
TCGCGCTCGGTCCCAGTTTTATCAGCATCATTGCGATGGGAGCCATCATCAGCGTCATTATCACAACCATCGTTGTCTAC
ACCGCCTTCCAAGAGGTCGACGAAAACTATACGAAAGTCATGAAAACATTCGGCGCAAAAAAGTGGGTTATTTTTAAAGA
AGTCATACTGCCTGCATCCTCCCCCGCGATTATTTCAACACTAAAAGTGAACGTCGGTTTATCATGGGTTGGCGTTATTG
TAGGGGAATTCCTCGTTTCGAAGGTCGGATTAGGATATATGATTATTTACGGATTCCAAGTCTTCAATTTTACACTCGTC
TTCTTAAGCCTGCTGATCATCGCCATCTTCGCCACTCTGATGTATCAGGGCGTCGAGCTGCTGGAAAAGAAATGGACGAA
GGGGAGGACATAA

Upstream 100 bases:

>100_bases
ACCATTCCTAAGGAATTGGCCGCGATGTTGCCTTTTGACGCCCGTCAGGAACCTTCCTTCCAGACACTGTTTCAAACGAT
ATGGAAGGAGCTGAATTCTC

Downstream 100 bases:

>100_bases
AAAACCCGGCACATGTGCCGGGTTTTTTATTCAATCCATCCAGATTCTTTCAGTTTTTTCAAGCTGATCGGAAGAACGGA
ATCCTTCATAATAAAGCTGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRNSKETIDLLHEQYQFKQKKEKWKVHSFQLAIFILFFSGWEISSRQGWIDPLIFSSPSAVWRLLLEKLGDGSLLSHIGV
TLFETVLGFLLGTFMGTCLAALLWWSNRLARILDPYLVILNAMPKVALGPILIVALGPSFISIIAMGAIISVIITTIVVY
TAFQEVDENYTKVMKTFGAKKWVIFKEVILPASSPAIISTLKVNVGLSWVGVIVGEFLVSKVGLGYMIIYGFQVFNFTLV
FLSLLIIAIFATLMYQGVELLEKKWTKGRT

Sequences:

>Translated_270_residues
MRNSKETIDLLHEQYQFKQKKEKWKVHSFQLAIFILFFSGWEISSRQGWIDPLIFSSPSAVWRLLLEKLGDGSLLSHIGV
TLFETVLGFLLGTFMGTCLAALLWWSNRLARILDPYLVILNAMPKVALGPILIVALGPSFISIIAMGAIISVIITTIVVY
TAFQEVDENYTKVMKTFGAKKWVIFKEVILPASSPAIISTLKVNVGLSWVGVIVGEFLVSKVGLGYMIIYGFQVFNFTLV
FLSLLIIAIFATLMYQGVELLEKKWTKGRT
>Mature_270_residues
MRNSKETIDLLHEQYQFKQKKEKWKVHSFQLAIFILFFSGWEISSRQGWIDPLIFSSPSAVWRLLLEKLGDGSLLSHIGV
TLFETVLGFLLGTFMGTCLAALLWWSNRLARILDPYLVILNAMPKVALGPILIVALGPSFISIIAMGAIISVIITTIVVY
TAFQEVDENYTKVMKTFGAKKWVIFKEVILPASSPAIISTLKVNVGLSWVGVIVGEFLVSKVGLGYMIIYGFQVFNFTLV
FLSLLIIAIFATLMYQGVELLEKKWTKGRT

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI87081802, Length=230, Percent_Identity=24.7826086956522, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786564, Length=271, Percent_Identity=23.6162361623616, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTLD_BACSU (O34649)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   D69995
- RefSeq:   NP_390940.1
- ProteinModelPortal:   O34649
- EnsemblBacteria:   EBBACT00000002132
- GeneID:   937097
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30620
- NMPDR:   fig|224308.1.peg.3065
- GenoList:   BSU30620
- GeneTree:   EBGT00070000032150
- HOGENOM:   HBG754934
- OMA:   ATFRINI
- ProtClustDB:   CLSK2518264
- BioCyc:   BSUB:BSU30620-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 30306; Mature: 30306

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11d10ecc)-; HASH(0x11da2a90)-; HASH(0x11c457b4)-; HASH(0xea69510)-; HASH(0x118e0650)-; HASH(0x1182caf8)-; HASH(0x10525f6c)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377