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The map label for this gene is kduI

Identifier: 16079271

GI number: 16079271

Start: 2325854

End: 2326681

Strand: Direct

Name: kduI

Synonym: BSU22130

Alternate gene names: 16079271

Gene position: 2325854-2326681 (Clockwise)

Preceding gene: 50812255

Following gene: 16079272

Centisome position: 55.17

GC content: 44.44

Gene sequence:

>828_bases
ATGGAAAATCGTTATTCTGTACATCCTGAACAAGTAAAACGCTTTACAACAGAGGAGCTTCGCAGTCATTTCTTAATGGA
TTCTTTATTTACAGAAAACAAACTTACGATGTATTACTCACATGAAGACCGGGTTGTCATCGGCGGAGCGGCTCCAGGGC
AAAGTGAACTGAAGCTTGATGCAGGTGATTTTCTAAAAACAGACTTCTTTTTGGAACGGCGTGAAATCGGGATTATTAAT
GTCGGCCAGCCTGGTGCCGTTAGAGTCGGCGATGATGAATATGTGCTTCAAACAAAGGATTTTCTCTATATTGGAATGGG
CAATCAGGATGTATCGTTTTCAAGCCTGAACGGGGAAAAAGCGAAGTTTTACTTCGTCTCCGCTTGCGCCCACAAAAGCT
ATCCGACACAAAAAGCCGCCCTATCTGAACTGACACCGGACCGCCTTGGTGATGATGCAGCGTCTAATGTCAGAAGTCTG
TACAAAGTCATTCATCAGGATGGCATTAAAAGCTGTCAGCTGATGATGGGAATAACGATGTTAGATCAAAACAACAACTG
GAATACCATGCCAGCACACGTTCATGACCGTCGGATGGAGGCTTATCTTTATCTGGATCTTGAAAAGGACTCAAAGGTAT
TTCATTTCATGGGCCAGCCGGACGAAACACGCCATCTTGTTGTTGGAAATGAGCAGGCTGTCCTTTCTCCCGCTTGGTCT
ATTCATTCTGGCGCAGGAACATCAAACTATAGCTTTGTGTGGGCGATGGCTGGAGAAAATTACACATTTACGGACATGGA
TCTCATTCCAATGGATGGGCTGAAATAA

Upstream 100 bases:

>100_bases
GTTGACTCTTTTCACTATTTATCCTAAAATTTTCTTTGAAACCGTTACCAAAATATTTTCATTCAAGTGATGCTGAAATC
CTAACCAAGGGGGAAATATA

Downstream 100 bases:

>100_bases
GATGGGTTATCTACATGACGCCTTTTCATTAAAAGGAAAAACAGCGCTGGTGACAGGCCCGGGAACAGGGATCGGTCAAG
GAATAGCCAAAGCCCTAGCC

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MENRYSVHPEQVKRFTTEELRSHFLMDSLFTENKLTMYYSHEDRVVIGGAAPGQSELKLDAGDFLKTDFFLERREIGIIN
VGQPGAVRVGDDEYVLQTKDFLYIGMGNQDVSFSSLNGEKAKFYFVSACAHKSYPTQKAALSELTPDRLGDDAASNVRSL
YKVIHQDGIKSCQLMMGITMLDQNNNWNTMPAHVHDRRMEAYLYLDLEKDSKVFHFMGQPDETRHLVVGNEQAVLSPAWS
IHSGAGTSNYSFVWAMAGENYTFTDMDLIPMDGLK

Sequences:

>Translated_275_residues
MENRYSVHPEQVKRFTTEELRSHFLMDSLFTENKLTMYYSHEDRVVIGGAAPGQSELKLDAGDFLKTDFFLERREIGIIN
VGQPGAVRVGDDEYVLQTKDFLYIGMGNQDVSFSSLNGEKAKFYFVSACAHKSYPTQKAALSELTPDRLGDDAASNVRSL
YKVIHQDGIKSCQLMMGITMLDQNNNWNTMPAHVHDRRMEAYLYLDLEKDSKVFHFMGQPDETRHLVVGNEQAVLSPAWS
IHSGAGTSNYSFVWAMAGENYTFTDMDLIPMDGLK
>Mature_275_residues
MENRYSVHPEQVKRFTTEELRSHFLMDSLFTENKLTMYYSHEDRVVIGGAAPGQSELKLDAGDFLKTDFFLERREIGIIN
VGQPGAVRVGDDEYVLQTKDFLYIGMGNQDVSFSSLNGEKAKFYFVSACAHKSYPTQKAALSELTPDRLGDDAASNVRSL
YKVIHQDGIKSCQLMMGITMLDQNNNWNTMPAHVHDRRMEAYLYLDLEKDSKVFHFMGQPDETRHLVVGNEQAVLSPAWS
IHSGAGTSNYSFVWAMAGENYTFTDMDLIPMDGLK

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=45.6834532374101, Blast_Score=274, Evalue=6e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_BACSU (P50843)

Other databases:

- EMBL:   L47838
- EMBL:   AL009126
- PIR:   E69648
- RefSeq:   NP_390095.1
- ProteinModelPortal:   P50843
- SMR:   P50843
- EnsemblBacteria:   EBBACT00000003832
- GeneID:   939062
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22130
- NMPDR:   fig|224308.1.peg.2218
- GenoList:   BSU22130
- GeneTree:   EBGT00050000005995
- HOGENOM:   HBG301328
- OMA:   MPAHTHD
- PhylomeDB:   P50843
- ProtClustDB:   PRK00924
- BioCyc:   BSUB:BSU22130-MONOMER
- BRENDA:   5.3.1.17
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31135; Mature: 31135

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRYSVHPEQVKRFTTEELRSHFLMDSLFTENKLTMYYSHEDRVVIGGAAPGQSELKLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCEEEC
AGDFLKTDFFLERREIGIINVGQPGAVRVGDDEYVLQTKDFLYIGMGNQDVSFSSLNGEK
CCCHHHHHHEEEECCCCEEECCCCCEEEECCCCEEEEECCEEEEECCCCCCEEECCCCCC
AKFYFVSACAHKSYPTQKAALSELTPDRLGDDAASNVRSLYKVIHQDGIKSCQLMMGITM
EEEEEEEEECCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHEEEEE
LDQNNNWNTMPAHVHDRRMEAYLYLDLEKDSKVFHFMGQPDETRHLVVGNEQAVLSPAWS
EECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEECCCCEEECCCCE
IHSGAGTSNYSFVWAMAGENYTFTDMDLIPMDGLK
EECCCCCCCCEEEEEECCCCEEEECEEEECCCCCC
>Mature Secondary Structure
MENRYSVHPEQVKRFTTEELRSHFLMDSLFTENKLTMYYSHEDRVVIGGAAPGQSELKLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCEEEC
AGDFLKTDFFLERREIGIINVGQPGAVRVGDDEYVLQTKDFLYIGMGNQDVSFSSLNGEK
CCCHHHHHHEEEECCCCEEECCCCCEEEECCCCEEEEECCEEEEECCCCCCEEECCCCCC
AKFYFVSACAHKSYPTQKAALSELTPDRLGDDAASNVRSLYKVIHQDGIKSCQLMMGITM
EEEEEEEEECCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHEEEEE
LDQNNNWNTMPAHVHDRRMEAYLYLDLEKDSKVFHFMGQPDETRHLVVGNEQAVLSPAWS
EECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEECCCCEEECCCCE
IHSGAGTSNYSFVWAMAGENYTFTDMDLIPMDGLK
EECCCCCCCCEEEEEECCCCEEEECEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377