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The map label for this gene is ypdP

Identifier: 16079257

GI number: 16079257

Start: 2309730

End: 2310419

Strand: Direct

Name: ypdP

Synonym: BSU21980

Alternate gene names: 16079257

Gene position: 2309730-2310419 (Clockwise)

Preceding gene: 16079254

Following gene: 16079258

Centisome position: 54.79

GC content: 42.32

Gene sequence:

>690_bases
TTGTTTAATAATTCGTTTTGGATCTTTTTTGCGATCATTCATTTTATCATTGTTCTTTTATTTTATAAAGGATTTGGCAA
AATGGGACTGTTTGTTTGGATCGGTTTTGCGACAGTCTGCGCCAACCTCCAAGTCGTCAAAACAGTCGAACTGTTTGGCT
TAACAGCGACACTCGGGAATGTGATGTATGGCACAATCTTTTTTGCGACAGATGTGCTGAATGAAAAATACGGACCAGCT
GAAGCCAGAAAAGCGGTATGGCTCGGATTCTCAACGCTCCTGACGCTGACATTTGTCATGCAGGGCGTGCTGCTTTTCGA
ACCGGCTTCCAGCGACATATCACAAACAGCGCTGGAAACGATCTTCGGATTCCTTCCGCGAGTTGCGTTAGGAAGTCTGC
TTGCCTTTATCTTCAGCCAAACGCTGGATGTTTATGTATATTCGGCAATTAGAAGGATATTTCCTTCTGATCGGCTTTTA
TGGCTCAGAAACGGCGGCAGTACAGCAGTCAGCCAGTTGTTTGATACATTCATATTCACTGCAGTCGCCTTTCTCGGCAT
TTATCCGGCAGACGTGTGGCTTCATATTTTTATTTCTACATATTTGATTAAGTTTGCGGTATCTTTAATTTCATTGCCTT
ATGCCTATGCAGCCAAAAAAATGATACCTAATGATGAAAGGAGTTCATAA

Upstream 100 bases:

>100_bases
ATGCGGTCTGAGCTTCATTACAATCACCTTACCATTCATTAGTTGCCGGGCTTATGCTATAATCAAACCAATCTTACCCC
GGAAAGGAAGCTTTTTCATC

Downstream 100 bases:

>100_bases
TGCCTACAGAAATATATGTAGACGGCGCAAGCGCCGGTAATCCAGGGCCTTCCGGTATCGGCATTTTTATCAAACATGAG
GGAAAAGCAGAATCTTTCTC

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MFNNSFWIFFAIIHFIIVLLFYKGFGKMGLFVWIGFATVCANLQVVKTVELFGLTATLGNVMYGTIFFATDVLNEKYGPA
EARKAVWLGFSTLLTLTFVMQGVLLFEPASSDISQTALETIFGFLPRVALGSLLAFIFSQTLDVYVYSAIRRIFPSDRLL
WLRNGGSTAVSQLFDTFIFTAVAFLGIYPADVWLHIFISTYLIKFAVSLISLPYAYAAKKMIPNDERSS

Sequences:

>Translated_229_residues
MFNNSFWIFFAIIHFIIVLLFYKGFGKMGLFVWIGFATVCANLQVVKTVELFGLTATLGNVMYGTIFFATDVLNEKYGPA
EARKAVWLGFSTLLTLTFVMQGVLLFEPASSDISQTALETIFGFLPRVALGSLLAFIFSQTLDVYVYSAIRRIFPSDRLL
WLRNGGSTAVSQLFDTFIFTAVAFLGIYPADVWLHIFISTYLIKFAVSLISLPYAYAAKKMIPNDERSS
>Mature_229_residues
MFNNSFWIFFAIIHFIIVLLFYKGFGKMGLFVWIGFATVCANLQVVKTVELFGLTATLGNVMYGTIFFATDVLNEKYGPA
EARKAVWLGFSTLLTLTFVMQGVLLFEPASSDISQTALETIFGFLPRVALGSLLAFIFSQTLDVYVYSAIRRIFPSDRLL
WLRNGGSTAVSQLFDTFIFTAVAFLGIYPADVWLHIFISTYLIKFAVSLISLPYAYAAKKMIPNDERSS

Specific function: Unknown

COG id: COG1738

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPDP_BACSU (P54163)

Other databases:

- EMBL:   L77246
- EMBL:   AL009126
- PIR:   C69934
- RefSeq:   NP_390081.1
- EnsemblBacteria:   EBBACT00000003034
- GeneID:   939075
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21980
- NMPDR:   fig|224308.1.peg.2204
- GenoList:   BSU21980
- GeneTree:   EBGT00050000001470
- HOGENOM:   HBG724525
- OMA:   NSIMRRF
- ProtClustDB:   CLSK2393386
- BioCyc:   BSUB:BSU21980-MONOMER
- InterPro:   IPR003744
- TIGRFAMs:   TIGR00697

Pfam domain/function: PF02592 DUF165

EC number: NA

Molecular weight: Translated: 25672; Mature: 25672

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x104f26e0)-; HASH(0xf4f54d0)-; HASH(0xfc8756c)-; HASH(0x1044d29c)-; HASH(0x105f6c5c)-; HASH(0xccb6740)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNSFWIFFAIIHFIIVLLFYKGFGKMGLFVWIGFATVCANLQVVKTVELFGLTATLGN
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VMYGTIFFATDVLNEKYGPAEARKAVWLGFSTLLTLTFVMQGVLLFEPASSDISQTALET
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHH
IFGFLPRVALGSLLAFIFSQTLDVYVYSAIRRIFPSDRLLWLRNGGSTAVSQLFDTFIFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
AVAFLGIYPADVWLHIFISTYLIKFAVSLISLPYAYAAKKMIPNDERSS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MFNNSFWIFFAIIHFIIVLLFYKGFGKMGLFVWIGFATVCANLQVVKTVELFGLTATLGN
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VMYGTIFFATDVLNEKYGPAEARKAVWLGFSTLLTLTFVMQGVLLFEPASSDISQTALET
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHH
IFGFLPRVALGSLLAFIFSQTLDVYVYSAIRRIFPSDRLLWLRNGGSTAVSQLFDTFIFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
AVAFLGIYPADVWLHIFISTYLIKFAVSLISLPYAYAAKKMIPNDERSS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377