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The map label for this gene is yomM

Identifier: 16079189

GI number: 16079189

Start: 2245147

End: 2246148

Strand: Direct

Name: yomM

Synonym: BSU21300

Alternate gene names: 16079189

Gene position: 2245147-2246148 (Clockwise)

Preceding gene: 16079188

Following gene: 16079192

Centisome position: 53.26

GC content: 37.72

Gene sequence:

>1002_bases
ATGACCAAACCAATTGAAAAGAATATGCTCAGATCTCGAGCAATAAAACTCCCCGAGGTCACGGAATCAATGTGGGAGCA
AGTAGATGAAGAGCACAGAAACTTGGTTCAAGAGTTTTTAGATGCTCATTCATTTAGAGATAAAACACGAAAGCAGTATT
ACTCCTCCCTTCGCCAATTCTTTTGGTGGGTACATACCTCTCTTAACGGGAAAAAACTTTATAAGATCTCAAAGCGTGAT
TTCATTAGGTATCAAAGTTTCTTAAAGAATCGTGGGATGTCTTCAAGTGGGATTGCTTTAAAAAAAGCCGGTGTATCATC
GTTAAATAATTATATCGAAAATGTTGTTGCAGAAGATGATCATAATTATGAGAAATTCAGAAATTTCACCCGCGGGCTTC
CAGCTATTCCTAAAACCACTACCTATGAAAAAGTTAAAGTTACATATGATGATTATAAACTGATGATGGACGCCCTAAAA
GAGGACGAAAATTATTTGGGGATGGCATGGCTTGCTACTGCCTTTAATGTTGGCGGGCGAAGAGCAGAACTCATACAGTT
AAAAACAGAAATATTAGATTACCCTGTTCCAGAGGGTCAGTCATACGTGATGAGTCATAAGGTATTTGGAAAAGGTAAAG
GTGAAGGAAAACCTCTTGAGTACATGATTAACACAGAAGCACTGGAGTATCTTCGCTTATGGCATGAAAAACGTGGCTAT
GATCATGAATACCTCTTCACTACTCAGTATGGCGGAGAGCCTAAACAGATGTCAGAGTCTTGGGCTGATTATTTTTGCTC
TGATGTGTTATCAGACATCCTTGGTCGACGTATAAACCCCCACCTCTTTAAAGCTTCGTGCATCACTTATCTCCTAGAAG
TTAAGAAAGTCAAAATTGAATTGATAAGCAAATATGTAGCTCATCATGAAGATGTCTCAACAACAATCAAACATTATGAT
TTACGGGATTTTGAAGAAGAAAAAAATCAAATATTTGTTTAG

Upstream 100 bases:

>100_bases
AAGAATACCTCTGAGACCTTAAGAGATGGACGATTAACCGCAGCGCTAAAAAAAGATTTAAAAGCAGATGGTATTAAAAC
AGACTAATGGTGGTGAATTA

Downstream 100 bases:

>100_bases
TTTTAAGCACCACAAATACATCCTGTTGAATCTCCAGTACTCCACCTTTTACAAAATCTATTTCCGGTACAATCTCCAAA
ACAACCATTGTCCCCCATCG

Product: integrase; phage SPbeta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MTKPIEKNMLRSRAIKLPEVTESMWEQVDEEHRNLVQEFLDAHSFRDKTRKQYYSSLRQFFWWVHTSLNGKKLYKISKRD
FIRYQSFLKNRGMSSSGIALKKAGVSSLNNYIENVVAEDDHNYEKFRNFTRGLPAIPKTTTYEKVKVTYDDYKLMMDALK
EDENYLGMAWLATAFNVGGRRAELIQLKTEILDYPVPEGQSYVMSHKVFGKGKGEGKPLEYMINTEALEYLRLWHEKRGY
DHEYLFTTQYGGEPKQMSESWADYFCSDVLSDILGRRINPHLFKASCITYLLEVKKVKIELISKYVAHHEDVSTTIKHYD
LRDFEEEKNQIFV

Sequences:

>Translated_333_residues
MTKPIEKNMLRSRAIKLPEVTESMWEQVDEEHRNLVQEFLDAHSFRDKTRKQYYSSLRQFFWWVHTSLNGKKLYKISKRD
FIRYQSFLKNRGMSSSGIALKKAGVSSLNNYIENVVAEDDHNYEKFRNFTRGLPAIPKTTTYEKVKVTYDDYKLMMDALK
EDENYLGMAWLATAFNVGGRRAELIQLKTEILDYPVPEGQSYVMSHKVFGKGKGEGKPLEYMINTEALEYLRLWHEKRGY
DHEYLFTTQYGGEPKQMSESWADYFCSDVLSDILGRRINPHLFKASCITYLLEVKKVKIELISKYVAHHEDVSTTIKHYD
LRDFEEEKNQIFV
>Mature_332_residues
TKPIEKNMLRSRAIKLPEVTESMWEQVDEEHRNLVQEFLDAHSFRDKTRKQYYSSLRQFFWWVHTSLNGKKLYKISKRDF
IRYQSFLKNRGMSSSGIALKKAGVSSLNNYIENVVAEDDHNYEKFRNFTRGLPAIPKTTTYEKVKVTYDDYKLMMDALKE
DENYLGMAWLATAFNVGGRRAELIQLKTEILDYPVPEGQSYVMSHKVFGKGKGEGKPLEYMINTEALEYLRLWHEKRGYD
HEYLFTTQYGGEPKQMSESWADYFCSDVLSDILGRRINPHLFKASCITYLLEVKKVKIELISKYVAHHEDVSTTIKHYDL
RDFEEEKNQIFV

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOMM_BACSU (O31971)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_390013.1
- ProteinModelPortal:   O31971
- EnsemblBacteria:   EBBACT00000001250
- GeneID:   939145
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21300
- NMPDR:   fig|224308.1.peg.2136
- GenoList:   BSU21300
- GeneTree:   EBGT00050000000693
- HOGENOM:   HBG218179
- OMA:   IELTRKD
- ProtClustDB:   CLSK491937
- BioCyc:   BSUB:BSU21300-MONOMER
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 39280; Mature: 39149

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPIEKNMLRSRAIKLPEVTESMWEQVDEEHRNLVQEFLDAHSFRDKTRKQYYSSLRQF
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWWVHTSLNGKKLYKISKRDFIRYQSFLKNRGMSSSGIALKKAGVSSLNNYIENVVAEDD
HHHHHCCCCCHHEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
HNYEKFRNFTRGLPAIPKTTTYEKVKVTYDDYKLMMDALKEDENYLGMAWLATAFNVGGR
CCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
RAELIQLKTEILDYPVPEGQSYVMSHKVFGKGKGEGKPLEYMINTEALEYLRLWHEKRGY
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCC
DHEYLFTTQYGGEPKQMSESWADYFCSDVLSDILGRRINPHLFKASCITYLLEVKKVKIE
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LISKYVAHHEDVSTTIKHYDLRDFEEEKNQIFV
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure 
TKPIEKNMLRSRAIKLPEVTESMWEQVDEEHRNLVQEFLDAHSFRDKTRKQYYSSLRQF
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWWVHTSLNGKKLYKISKRDFIRYQSFLKNRGMSSSGIALKKAGVSSLNNYIENVVAEDD
HHHHHCCCCCHHEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
HNYEKFRNFTRGLPAIPKTTTYEKVKVTYDDYKLMMDALKEDENYLGMAWLATAFNVGGR
CCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
RAELIQLKTEILDYPVPEGQSYVMSHKVFGKGKGEGKPLEYMINTEALEYLRLWHEKRGY
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCC
DHEYLFTTQYGGEPKQMSESWADYFCSDVLSDILGRRINPHLFKASCITYLLEVKKVKIE
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LISKYVAHHEDVSTTIKHYDLRDFEEEKNQIFV
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377