Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159900939
Identifier: 159900939
GI number: 159900939
Start: 5665754
End: 5666326
Strand: Direct
Name: 159900939
Synonym: Haur_4426
Alternate gene names: NA
Gene position: 5665754-5666326 (Clockwise)
Preceding gene: 159900934
Following gene: 159900940
Centisome position: 89.27
GC content: 48.87
Gene sequence:
>573_bases ATGGCCATCACAAGTCGCGATCTACGTTCAGCGGAGGTTGTGCGCCGCACGAGACCTACCACCGTGATTACCTTACCGCA AACGCGGCAGCGGTATAGCAGTCGCTCAGTGGGCTTTGGTGTGCATAACAAATTTGCTTATGCCATCTGTATTATTTTGG CGTTGTTCTTAGCTAATGCCATGTTCAGCCCAATTGTTTCGTGGTTCAAGGTTAAATACGATGATGTGAAATATGGCCGC CCACGCACGATGCAAACCACCGCCTTTGTCGGCCACGATGAAACCAATGGCTTGCCTTCACACTTTGTCGCAATGAATAT GGAACGCCGAATTGTGATTGTTGAAATGCCTGGTGGTGATCCAGCTAAAGCCCGAACGATTGTTGGCCCATATCTCTTTG GGGCCGGCGAAGATTTGACCCCTGTTAGCTTGCGCTTTGCCGATGTCAATGCTGACCAACGTTTGGATATGTTGGTGAGC GTCAAACAAGAAGAGATGGTCTATATCAATGATGCGAGCAGCAATCAATTTCGCATGATCACCAGCGAAGAGCTAGCCAA ACTGCAACAATAG
Upstream 100 bases:
>100_bases GAGTAAAAAGGCTACTTTTTACTTGACACAGAACGCATGTTCTACTATACTCACAGCCAGCATATTTGTTCTCAAATGGT TGACTCACAGGAGGTTCGCT
Downstream 100 bases:
>100_bases GTATCAACGATTTCAGGGTAACCGAGAGTCAACAGCAAATATGTGAGTATCTACACCAATTCAGAGTCGCAACTGCGGCT CTGAATTTTTTATAGTTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MAITSRDLRSAEVVRRTRPTTVITLPQTRQRYSSRSVGFGVHNKFAYAICIILALFLANAMFSPIVSWFKVKYDDVKYGR PRTMQTTAFVGHDETNGLPSHFVAMNMERRIVIVEMPGGDPAKARTIVGPYLFGAGEDLTPVSLRFADVNADQRLDMLVS VKQEEMVYINDASSNQFRMITSEELAKLQQ
Sequences:
>Translated_190_residues MAITSRDLRSAEVVRRTRPTTVITLPQTRQRYSSRSVGFGVHNKFAYAICIILALFLANAMFSPIVSWFKVKYDDVKYGR PRTMQTTAFVGHDETNGLPSHFVAMNMERRIVIVEMPGGDPAKARTIVGPYLFGAGEDLTPVSLRFADVNADQRLDMLVS VKQEEMVYINDASSNQFRMITSEELAKLQQ >Mature_189_residues AITSRDLRSAEVVRRTRPTTVITLPQTRQRYSSRSVGFGVHNKFAYAICIILALFLANAMFSPIVSWFKVKYDDVKYGRP RTMQTTAFVGHDETNGLPSHFVAMNMERRIVIVEMPGGDPAKARTIVGPYLFGAGEDLTPVSLRFADVNADQRLDMLVSV KQEEMVYINDASSNQFRMITSEELAKLQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21412; Mature: 21281
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITSRDLRSAEVVRRTRPTTVITLPQTRQRYSSRSVGFGVHNKFAYAICIILALFLANA CCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH MFSPIVSWFKVKYDDVKYGRPRTMQTTAFVGHDETNGLPSHFVAMNMERRIVIVEMPGGD HHHHHHHHHHEEECCCCCCCCCCEEEEEEECCCCCCCCCCHHEEECCCCEEEEEECCCCC PAKARTIVGPYLFGAGEDLTPVSLRFADVNADQRLDMLVSVKQEEMVYINDASSNQFRMI CCCCEEEECCEEECCCCCCCEEEEEEEECCCCHHHHHHEEECCCCEEEEECCCCCEEEEE TSEELAKLQQ CHHHHHHHCC >Mature Secondary Structure AITSRDLRSAEVVRRTRPTTVITLPQTRQRYSSRSVGFGVHNKFAYAICIILALFLANA CCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH MFSPIVSWFKVKYDDVKYGRPRTMQTTAFVGHDETNGLPSHFVAMNMERRIVIVEMPGGD HHHHHHHHHHEEECCCCCCCCCCEEEEEEECCCCCCCCCCHHEEECCCCEEEEEECCCCC PAKARTIVGPYLFGAGEDLTPVSLRFADVNADQRLDMLVSVKQEEMVYINDASSNQFRMI CCCCEEEECCEEECCCCCCCEEEEEEEECCCCHHHHHHEEECCCCEEEEECCCCCEEEEE TSEELAKLQQ CHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA