Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
---|---|
Accession | NC_009972 |
Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159900006
Identifier: 159900006
GI number: 159900006
Start: 4395434
End: 4396039
Strand: Direct
Name: 159900006
Synonym: Haur_3489
Alternate gene names: NA
Gene position: 4395434-4396039 (Clockwise)
Preceding gene: 159900005
Following gene: 159900038
Centisome position: 69.26
GC content: 51.98
Gene sequence:
>606_bases ATGAGCAAGCTCCAAGCGGTGTTGTTCGATGTTGATGGGGTGCTATGTGTGCCGATGTTTCGCTTTGCTGCTTATTTGGA GCGCGAACATAACCTCAGCTTCAAACATACCCAGCCATTTTTTCAAGGGGTATTTTTGGATTGCATTGATGGCAAGGCCG ATCTGCGAGAGGTTTTGCCATCGTACCTGGAGCAATGGGCTTGGCCTAGCGACCTTGATAGCTTCTTGGCGCGTTGGTTT CACGAAGAGAGCTTGGTTGATGCCCGGGTGTTGAATGCGATGCAACTGCTGCGTGAGCGTGGAATGAAGTGCTATCTTGC GACCAACCAAGAGCGCCATCGTAGCAACTATCTTTGGCACGATTTAGGTATGTGGCGCTGGTGCGATGGCATGTTGGCTT CATGGGGCATTGGCGCACGCAAACCAATGCCCGAATATTTCGAGCGGGTTACCCAGCAACTTGGGCTAGCACCCGCCAGC ATCGCCTTTTGGGATGATGCCCAAGCCAATGTTGTTGCCGCCCAAAGCCATGGTTGGCAAGCCCAACACTATCGCGATTA CAGCAACCTAGCGGCTTGGCTCAAAACCACTATTCCTCAAAGTTAA
Upstream 100 bases:
>100_bases ACGGCCCAGTCAGCTTAATCAGTTTGGTCGAAACCTACGCCAACCATGGCCTTGGTCATATCGACCAAATTCAGCGCACC TTGGCAGCTGAGCCACAAGC
Downstream 100 bases:
>100_bases ACTCCCGAACGAGGCTGGAGCTACTCGGTTTGTTCGCTCCAGCCTCGTTCTTGCAATTCGTCGCGTAAACGCTCGGTCAA ACGCTCGGCATCAGTGCGCC
Product: HAD family hydrolase
Products: NA
Alternate protein names: Hydrolase Protein; Haloacid Dehydrogenase Hydrolase; HAD Superfamily Hydrolase; HAD-Superfamily Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Haloacid Dehydrogenase Hydrolase Protein; Hydrolase
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSKLQAVLFDVDGVLCVPMFRFAAYLEREHNLSFKHTQPFFQGVFLDCIDGKADLREVLPSYLEQWAWPSDLDSFLARWF HEESLVDARVLNAMQLLRERGMKCYLATNQERHRSNYLWHDLGMWRWCDGMLASWGIGARKPMPEYFERVTQQLGLAPAS IAFWDDAQANVVAAQSHGWQAQHYRDYSNLAAWLKTTIPQS
Sequences:
>Translated_201_residues MSKLQAVLFDVDGVLCVPMFRFAAYLEREHNLSFKHTQPFFQGVFLDCIDGKADLREVLPSYLEQWAWPSDLDSFLARWF HEESLVDARVLNAMQLLRERGMKCYLATNQERHRSNYLWHDLGMWRWCDGMLASWGIGARKPMPEYFERVTQQLGLAPAS IAFWDDAQANVVAAQSHGWQAQHYRDYSNLAAWLKTTIPQS >Mature_200_residues SKLQAVLFDVDGVLCVPMFRFAAYLEREHNLSFKHTQPFFQGVFLDCIDGKADLREVLPSYLEQWAWPSDLDSFLARWFH EESLVDARVLNAMQLLRERGMKCYLATNQERHRSNYLWHDLGMWRWCDGMLASWGIGARKPMPEYFERVTQQLGLAPASI AFWDDAQANVVAAQSHGWQAQHYRDYSNLAAWLKTTIPQS
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23406; Mature: 23275
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLQAVLFDVDGVLCVPMFRFAAYLEREHNLSFKHTQPFFQGVFLDCIDGKADLREVLP CCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH SYLEQWAWPSDLDSFLARWFHEESLVDARVLNAMQLLRERGMKCYLATNQERHRSNYLWH HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCHH DLGMWRWCDGMLASWGIGARKPMPEYFERVTQQLGLAPASIAFWDDAQANVVAAQSHGWQ HCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC AQHYRDYSNLAAWLKTTIPQS HHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKLQAVLFDVDGVLCVPMFRFAAYLEREHNLSFKHTQPFFQGVFLDCIDGKADLREVLP CCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH SYLEQWAWPSDLDSFLARWFHEESLVDARVLNAMQLLRERGMKCYLATNQERHRSNYLWH HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCHH DLGMWRWCDGMLASWGIGARKPMPEYFERVTQQLGLAPASIAFWDDAQANVVAAQSHGWQ HCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCC AQHYRDYSNLAAWLKTTIPQS HHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA