Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899878
Identifier: 159899878
GI number: 159899878
Start: 4238588
End: 4240006
Strand: Direct
Name: 159899878
Synonym: Haur_3361
Alternate gene names: NA
Gene position: 4238588-4240006 (Clockwise)
Preceding gene: 159899874
Following gene: 159899883
Centisome position: 66.79
GC content: 51.3
Gene sequence:
>1419_bases ATGACGTTTGCGAAGCTGCGTGTACGGGCAATGATGGTTGCCTTGTTGCTTTCAATCTTTGCAGTAGGCGGTCGGGGCGT ATCAGCTCAAACCAATGCCTATGCAACCGCATTCACCACCTCGATCACCTACCAAAACATTGGTACTGGTACTGCTAACA TCAACTTGACCGTGTACAGCTCAAGTGGAACTCCATCAGCCATCCCAGCCTCAACCTTGGCTGCTAATGGCGCTGGTGCC TACTTTGTTGGCTCAGTCAGTGGCTTGGGCACCACCTTCAATGGTTCAGCAGTGATCTCAGCAGATCAACCAATTGCTGC AACCTTGGTGCAAATCCCAGCCGCAGCTTCACAAGTCAAGAACCGCCCATTGTCAAATGGTTTCTCAAGCGGCTCAGACA CCGTGTTGATTCCAACGGTTTTGAAGGCATCATCAAACTACACCACCAAGTTTGTGATTCAAAACACCGACTCAGTGGCA AATGACTTCACCGTTCAATTCATCAATCCAGCAACTGGGGCAGTTGTTCACACTGCTAACCCAACTAACGTCTTGCCAAA CACCTCAGTCTACTACGATGCTGGCACGATTTCAGCCTTGGGTGCAAGCTTCAGCGGCTCAGTCAAAGTAACGGCTGTCA AGAATGGCACCAGCAACCCTGGTAGCGCCGTTGGTACCGCCCTTGAATTGCAAACCAATGGTGTTGGTGCTTATGCTTCA CAAGCATTCCCATCAACTGCTGCTGCAACCAAAGTTTCGATGGCAACTGCCCTCTGTAGCTATGTGATTCCAAGTGGTCA AACCACCTCGTTCTATGCAGTCCAAAACGCTGGTACTTCATCAGCAAGCGTGACTGTAACCTACGTTGGTACCGCTGCTG GTTCACCAGTCAACGTTACAAGCACCGCAGTCAACATTGCTGCTGGCGCTAAAGCTAGCTTCAATCCTTGTGGTACCACT CCAACCAACTTCACTGGCTCAGCAACCATCAACTCAACCCAACCAATCTTGGCTGTTGGTAAAGTTAATGGTGGTGGCTT GTACACCGCATTCGAAGGTGCAACCGCTGGTAGCGCCAAGACTGCATTGCCATACGTTCGCTGGTTGACCCCAGCTCAAG GTGGCCAACAAACCTACATCGCTATCCAAAACGTTGGCACGAGCGCAGCAAGCAGCGTAACCGTCAAGTACTATAGCGGT GCTGGTGCATTGCTCGGTACTCACACCATCCCAAGCATCGCTGCTGGCGCTAAAGCTAGCTCAAACCCAACCAACGCTGG CGTAACCAATATGGGTGTTGGTGGTGGTTCAGCCGTGGTTGAAGGCGCTGGCGCTCAATTGATTGTGGTTGCCCGCGTAA CTTCACCTGTTGGTACTGGTACCACCGGCGAAGACTACAACGGTATTCCTTTCAACTAG
Upstream 100 bases:
>100_bases ATTGCGAGGAACCTAGGATCTTGTGATACTATAGCCAGCATAACAAGGGAATACCTAAAAGCGTTTAGGTAGATTAACGG TCTTATAAAGGAGTTTATCA
Downstream 100 bases:
>100_bases GCTTAAACACTCTTAGTATTCCCTTGGGCCTGCTCCAGCAATGGGGCAGGCTTTTTTGACCCAATAAAAAACGCCAGTTC GTTTGAACTGGCGTTTGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MTFAKLRVRAMMVALLLSIFAVGGRGVSAQTNAYATAFTTSITYQNIGTGTANINLTVYSSSGTPSAIPASTLAANGAGA YFVGSVSGLGTTFNGSAVISADQPIAATLVQIPAAASQVKNRPLSNGFSSGSDTVLIPTVLKASSNYTTKFVIQNTDSVA NDFTVQFINPATGAVVHTANPTNVLPNTSVYYDAGTISALGASFSGSVKVTAVKNGTSNPGSAVGTALELQTNGVGAYAS QAFPSTAAATKVSMATALCSYVIPSGQTTSFYAVQNAGTSSASVTVTYVGTAAGSPVNVTSTAVNIAAGAKASFNPCGTT PTNFTGSATINSTQPILAVGKVNGGGLYTAFEGATAGSAKTALPYVRWLTPAQGGQQTYIAIQNVGTSAASSVTVKYYSG AGALLGTHTIPSIAAGAKASSNPTNAGVTNMGVGGGSAVVEGAGAQLIVVARVTSPVGTGTTGEDYNGIPFN
Sequences:
>Translated_472_residues MTFAKLRVRAMMVALLLSIFAVGGRGVSAQTNAYATAFTTSITYQNIGTGTANINLTVYSSSGTPSAIPASTLAANGAGA YFVGSVSGLGTTFNGSAVISADQPIAATLVQIPAAASQVKNRPLSNGFSSGSDTVLIPTVLKASSNYTTKFVIQNTDSVA NDFTVQFINPATGAVVHTANPTNVLPNTSVYYDAGTISALGASFSGSVKVTAVKNGTSNPGSAVGTALELQTNGVGAYAS QAFPSTAAATKVSMATALCSYVIPSGQTTSFYAVQNAGTSSASVTVTYVGTAAGSPVNVTSTAVNIAAGAKASFNPCGTT PTNFTGSATINSTQPILAVGKVNGGGLYTAFEGATAGSAKTALPYVRWLTPAQGGQQTYIAIQNVGTSAASSVTVKYYSG AGALLGTHTIPSIAAGAKASSNPTNAGVTNMGVGGGSAVVEGAGAQLIVVARVTSPVGTGTTGEDYNGIPFN >Mature_471_residues TFAKLRVRAMMVALLLSIFAVGGRGVSAQTNAYATAFTTSITYQNIGTGTANINLTVYSSSGTPSAIPASTLAANGAGAY FVGSVSGLGTTFNGSAVISADQPIAATLVQIPAAASQVKNRPLSNGFSSGSDTVLIPTVLKASSNYTTKFVIQNTDSVAN DFTVQFINPATGAVVHTANPTNVLPNTSVYYDAGTISALGASFSGSVKVTAVKNGTSNPGSAVGTALELQTNGVGAYASQ AFPSTAAATKVSMATALCSYVIPSGQTTSFYAVQNAGTSSASVTVTYVGTAAGSPVNVTSTAVNIAAGAKASFNPCGTTP TNFTGSATINSTQPILAVGKVNGGGLYTAFEGATAGSAKTALPYVRWLTPAQGGQQTYIAIQNVGTSAASSVTVKYYSGA GALLGTHTIPSIAAGAKASSNPTNAGVTNMGVGGGSAVVEGAGAQLIVVARVTSPVGTGTTGEDYNGIPFN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46633; Mature: 46502
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFAKLRVRAMMVALLLSIFAVGGRGVSAQTNAYATAFTTSITYQNIGTGTANINLTVYS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE SSGTPSAIPASTLAANGAGAYFVGSVSGLGTTFNGSAVISADQPIAATLVQIPAAASQVK CCCCCCCCCCHHHCCCCCCEEEEECCCCCCEEECCCEEEECCCCHHHHHHHCCCHHHHHH NRPLSNGFSSGSDTVLIPTVLKASSNYTTKFVIQNTDSVANDFTVQFINPATGAVVHTAN CCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCC PTNVLPNTSVYYDAGTISALGASFSGSVKVTAVKNGTSNPGSAVGTALELQTNGVGAYAS CCCCCCCCEEEEECCCHHHHCCCCCCCEEEEEEECCCCCCCCHHCEEEEEEECCCCCHHH QAFPSTAAATKVSMATALCSYVIPSGQTTSFYAVQNAGTSSASVTVTYVGTAAGSPVNVT CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEE STAVNIAAGAKASFNPCGTTPTNFTGSATINSTQPILAVGKVNGGGLYTAFEGATAGSAK HEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCEEEEEECCCCCCCCC TALPYVRWLTPAQGGQQTYIAIQNVGTSAASSVTVKYYSGAGALLGTHTIPSIAAGAKAS CCCCEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEECCCCCHHHCCCCCC SNPTNAGVTNMGVGGGSAVVEGAGAQLIVVARVTSPVGTGTTGEDYNGIPFN CCCCCCCCEECCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TFAKLRVRAMMVALLLSIFAVGGRGVSAQTNAYATAFTTSITYQNIGTGTANINLTVYS CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE SSGTPSAIPASTLAANGAGAYFVGSVSGLGTTFNGSAVISADQPIAATLVQIPAAASQVK CCCCCCCCCCHHHCCCCCCEEEEECCCCCCEEECCCEEEECCCCHHHHHHHCCCHHHHHH NRPLSNGFSSGSDTVLIPTVLKASSNYTTKFVIQNTDSVANDFTVQFINPATGAVVHTAN CCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCC PTNVLPNTSVYYDAGTISALGASFSGSVKVTAVKNGTSNPGSAVGTALELQTNGVGAYAS CCCCCCCCEEEEECCCHHHHCCCCCCCEEEEEEECCCCCCCCHHCEEEEEEECCCCCHHH QAFPSTAAATKVSMATALCSYVIPSGQTTSFYAVQNAGTSSASVTVTYVGTAAGSPVNVT CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEE STAVNIAAGAKASFNPCGTTPTNFTGSATINSTQPILAVGKVNGGGLYTAFEGATAGSAK HEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCEEEEEECCCCCCCCC TALPYVRWLTPAQGGQQTYIAIQNVGTSAASSVTVKYYSGAGALLGTHTIPSIAAGAKAS CCCCEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEECCCCCHHHCCCCCC SNPTNAGVTNMGVGGGSAVVEGAGAQLIVVARVTSPVGTGTTGEDYNGIPFN CCCCCCCCEECCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA