Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899832
Identifier: 159899832
GI number: 159899832
Start: 4179605
End: 4180150
Strand: Direct
Name: 159899832
Synonym: Haur_3315
Alternate gene names: NA
Gene position: 4179605-4180150 (Clockwise)
Preceding gene: 159899831
Following gene: 159899833
Centisome position: 65.86
GC content: 48.53
Gene sequence:
>546_bases ATGTCGCTGATTGCAGGAAACTTGGCGGTCGTTCAAAAGCTCCTCGACGGCGCAGCTATGTCGTGGGGCATTTATGGTGG AGCCGCTGCCCACTTCTATGGCAGCCGTCGGCCAATTAACGATATTGATATTATTGTGCCAGCCAATACCCTAAGCGAAA TTGCCCGCTTGTTGCAACAAGGCCAAAAGGCTGTGCAATACGATGGCGGACGCATTTTATGGCGCGGGATTATTTTGCAA GAAGATTTGACAATTCGGCTAAATGGCAACATTTATCCATTTGTGCTTGATCCACCGATGATCGAACGGTTGCAACGCAA ACCATTGCTTGGCTCACGCGTGCTCTTTTTGGCTCCCGAAGATGTATTGGTGCATAAATTAATTTTGTATCGTGGGCCTG AGCAACAACGGTTTGATATTGTCGATTGCGAAGGCATTATCAAGCGTCACCAACTCGACCTTGAATATTTGCGCCAACGC TTGCAAACCAGCAATGCAACCACCATCGTTACGCCACGCATTGCCGATATGGGCGTAACCCTGTAA
Upstream 100 bases:
>100_bases TGTGGGTGCAATTTTACGACATGACGCTCGAACGGAGTGATTGGCAAGCGGCTCAACATCGGTCAGTTATCCACGTTAAT CAATAAGAAGGAAGCAGTGT
Downstream 100 bases:
>100_bases GTTTTAAGGCATTATGGGCGCATTGCCTGTAGTGCCTTTTTAATTGATTAATGCTCGGTAGCGTATGATGAAAACCACCC AACCAGCCCATCCTATCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSLIAGNLAVVQKLLDGAAMSWGIYGGAAAHFYGSRRPINDIDIIVPANTLSEIARLLQQGQKAVQYDGGRILWRGIILQ EDLTIRLNGNIYPFVLDPPMIERLQRKPLLGSRVLFLAPEDVLVHKLILYRGPEQQRFDIVDCEGIIKRHQLDLEYLRQR LQTSNATTIVTPRIADMGVTL
Sequences:
>Translated_181_residues MSLIAGNLAVVQKLLDGAAMSWGIYGGAAAHFYGSRRPINDIDIIVPANTLSEIARLLQQGQKAVQYDGGRILWRGIILQ EDLTIRLNGNIYPFVLDPPMIERLQRKPLLGSRVLFLAPEDVLVHKLILYRGPEQQRFDIVDCEGIIKRHQLDLEYLRQR LQTSNATTIVTPRIADMGVTL >Mature_180_residues SLIAGNLAVVQKLLDGAAMSWGIYGGAAAHFYGSRRPINDIDIIVPANTLSEIARLLQQGQKAVQYDGGRILWRGIILQE DLTIRLNGNIYPFVLDPPMIERLQRKPLLGSRVLFLAPEDVLVHKLILYRGPEQQRFDIVDCEGIIKRHQLDLEYLRQRL QTSNATTIVTPRIADMGVTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20327; Mature: 20196
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIAGNLAVVQKLLDGAAMSWGIYGGAAAHFYGSRRPINDIDIIVPANTLSEIARLLQQ CCEECCCHHHHHHHHCCCHHCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHH GQKAVQYDGGRILWRGIILQEDLTIRLNGNIYPFVLDPPMIERLQRKPLLGSRVLFLAPE CCHHEECCCCEEEEEEEEEECCEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEEECCH DVLVHKLILYRGPEQQRFDIVDCEGIIKRHQLDLEYLRQRLQTSNATTIVTPRIADMGVT HHHHHHHHHHCCCCCCCCEEECHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCHHCCCCC L C >Mature Secondary Structure SLIAGNLAVVQKLLDGAAMSWGIYGGAAAHFYGSRRPINDIDIIVPANTLSEIARLLQQ CEECCCHHHHHHHHCCCHHCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHH GQKAVQYDGGRILWRGIILQEDLTIRLNGNIYPFVLDPPMIERLQRKPLLGSRVLFLAPE CCHHEECCCCEEEEEEEEEECCEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEEECCH DVLVHKLILYRGPEQQRFDIVDCEGIIKRHQLDLEYLRQRLQTSNATTIVTPRIADMGVT HHHHHHHHHHCCCCCCCCEEECHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCHHCCCCC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA