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The map label for this gene is ybbI [C]

Identifier: 159899670

GI number: 159899670

Start: 3979668

End: 3980063

Strand: Direct

Name: ybbI [C]

Synonym: Haur_3152

Alternate gene names: 159899670

Gene position: 3979668-3980063 (Clockwise)

Preceding gene: 159899668

Following gene: 159899671

Centisome position: 62.71

GC content: 47.22

Gene sequence:

>396_bases
ATGCAACAACTGAGCATCAGTATGGTCGCCAAACAGGCGGGCATCAAAGCCTCAACCATTCGTTATTATGAAGAAATTAA
TCTATTGCCGCCTGCTGCTCGCCAGAATGGTCGGCGTTATTACGATCAACAGATTTTCGAGCGTTTAGCGTTTATTCGCA
CAACCCAACGCCTTGGCTTTAGCCTCAACGAAATTCAATTGCTATTTCAACATGAACAGCAACAGGCTCCGTTAGCAGGC
TTATGGCGGCAATTAGCCAAGCAAAAGTTGGCCGATCTCAGCCAATTGCTCGAACAAGCCAGCCATGTGCAACAATTACT
CCAGCGCGGGCTACGTTGTCGCTGCGCCACCCTTGAAATGTGTGTCCATTGTGTGTTACAACATTGTCAAGATTAA

Upstream 100 bases:

>100_bases
CGACCTCCACTTGACAGCTATTGCATGATTACAGTAGCTCGTTGGCAGTCTACAAGTTCAAGTTAACTGGAAGTCAAGCA
GCAATTTCAGGGGTCGGCAT

Downstream 100 bases:

>100_bases
ATCGTGAAACCTTTTGATACTGTGTCTACGTATAACGCCTTAACAAATCGATCAACTTAGGAGGATGTGCATGTTCCGTA
AATTGCTCGCCAGCGTTGGT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MQQLSISMVAKQAGIKASTIRYYEEINLLPPAARQNGRRYYDQQIFERLAFIRTTQRLGFSLNEIQLLFQHEQQQAPLAG
LWRQLAKQKLADLSQLLEQASHVQQLLQRGLRCRCATLEMCVHCVLQHCQD

Sequences:

>Translated_131_residues
MQQLSISMVAKQAGIKASTIRYYEEINLLPPAARQNGRRYYDQQIFERLAFIRTTQRLGFSLNEIQLLFQHEQQQAPLAG
LWRQLAKQKLADLSQLLEQASHVQQLLQRGLRCRCATLEMCVHCVLQHCQD
>Mature_131_residues
MQQLSISMVAKQAGIKASTIRYYEEINLLPPAARQNGRRYYDQQIFERLAFIRTTQRLGFSLNEIQLLFQHEQQQAPLAG
LWRQLAKQKLADLSQLLEQASHVQQLLQRGLRCRCATLEMCVHCVLQHCQD

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011789
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15225; Mature: 15225

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLSISMVAKQAGIKASTIRYYEEINLLPPAARQNGRRYYDQQIFERLAFIRTTQRLGF
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
SLNEIQLLFQHEQQQAPLAGLWRQLAKQKLADLSQLLEQASHVQQLLQRGLRCRCATLEM
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVHCVLQHCQD
HHHHHHHHHCC
>Mature Secondary Structure
MQQLSISMVAKQAGIKASTIRYYEEINLLPPAARQNGRRYYDQQIFERLAFIRTTQRLGF
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
SLNEIQLLFQHEQQQAPLAGLWRQLAKQKLADLSQLLEQASHVQQLLQRGLRCRCATLEM
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVHCVLQHCQD
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]