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The map label for this gene is ywhC [H]

Identifier: 159899584

GI number: 159899584

Start: 3871189

End: 3871902

Strand: Direct

Name: ywhC [H]

Synonym: Haur_3065

Alternate gene names: 159899584

Gene position: 3871189-3871902 (Clockwise)

Preceding gene: 159899582

Following gene: 159899585

Centisome position: 61.0

GC content: 48.32

Gene sequence:

>714_bases
ATGCAGATTGATATGAATGATTTTGTGATGCGTTTGGTGGCGATTGTTTTAGGCGTAACCATCCATGAATTTTCGCATGC
CTTTGTGGCCTTGCGCTTAGGCGACCCAACCGCTGCCCAAGAAGGGCGAGTTTCGCTCAATCCGGTGGTGCATTTTGATC
CGCTGGGCGCGTTTATGATGTTTTTCGTGATGCTGGGCTATGCCCCGATGGCCTGGGGTCGGCCTGTGCCAATCAATGTT
TTTCGGATTCGCTGGGGGCGACGAGGTTTTGCGCTTTCCTCACTGGCAGGCCCAACCAGCAACTTACTCTTAGCCTCAAT
CTTTGCCATCCCGCTCTATATTAATGGTGGGATGTGGCTTTCCGAGCAACTCTATACATTTCTCTATTATGTAATTATAA
CCAATATTGGCTTGGCGGCCTTTAATATGCTGCCCTTGCCACCACTTGATGGCTTTAACACCTTTGCTGGCTTGTTGCCA
CAAGGCTGGGCTACGCCAATGGAGCGTTTACGGCGGCCAGCTAATATTATTTTGATGATTTTAATTCTGTTGCCATGGAT
GATCAATCGGCTTAATCTTGGTCAACTTGATCTTGACCCACGGATTTTAGATGCCATGATTGCCCCGATCTTCCAATTAT
TCCAACGGATCGTTTTGCCCGTTGCTGGTTGTTGTCATGCCGTTGGCCATAATCATGATCATGCTGAAGCCTAG

Upstream 100 bases:

>100_bases
TAGCTAACCCTTATCTTCCAACTACAACAGCAGCATAATCAGGGCTAATTCGTGGTAGGATACAGCCTGATAATGCTGTT
GCTCGTGGGGAGAGCCTTGT

Downstream 100 bases:

>100_bases
GAGTTTTCATGAGTGCGCTGATGCGCTTAGGCCAACTCTGGGCGGCTTTACGCGCCAAGGTAACTCCCGCCGAACGCGCC
TTAGTGCAACAACTTTTAGC

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MQIDMNDFVMRLVAIVLGVTIHEFSHAFVALRLGDPTAAQEGRVSLNPVVHFDPLGAFMMFFVMLGYAPMAWGRPVPINV
FRIRWGRRGFALSSLAGPTSNLLLASIFAIPLYINGGMWLSEQLYTFLYYVIITNIGLAAFNMLPLPPLDGFNTFAGLLP
QGWATPMERLRRPANIILMILILLPWMINRLNLGQLDLDPRILDAMIAPIFQLFQRIVLPVAGCCHAVGHNHDHAEA

Sequences:

>Translated_237_residues
MQIDMNDFVMRLVAIVLGVTIHEFSHAFVALRLGDPTAAQEGRVSLNPVVHFDPLGAFMMFFVMLGYAPMAWGRPVPINV
FRIRWGRRGFALSSLAGPTSNLLLASIFAIPLYINGGMWLSEQLYTFLYYVIITNIGLAAFNMLPLPPLDGFNTFAGLLP
QGWATPMERLRRPANIILMILILLPWMINRLNLGQLDLDPRILDAMIAPIFQLFQRIVLPVAGCCHAVGHNHDHAEA
>Mature_237_residues
MQIDMNDFVMRLVAIVLGVTIHEFSHAFVALRLGDPTAAQEGRVSLNPVVHFDPLGAFMMFFVMLGYAPMAWGRPVPINV
FRIRWGRRGFALSSLAGPTSNLLLASIFAIPLYINGGMWLSEQLYTFLYYVIITNIGLAAFNMLPLPPLDGFNTFAGLLP
QGWATPMERLRRPANIILMILILLPWMINRLNLGQLDLDPRILDAMIAPIFQLFQRIVLPVAGCCHAVGHNHDHAEA

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 26451; Mature: 26451

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIDMNDFVMRLVAIVLGVTIHEFSHAFVALRLGDPTAAQEGRVSLNPVVHFDPLGAFMM
CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECCCEEEECCHHHHHH
FFVMLGYAPMAWGRPVPINVFRIRWGRRGFALSSLAGPTSNLLLASIFAIPLYINGGMWL
HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCH
SEQLYTFLYYVIITNIGLAAFNMLPLPPLDGFNTFAGLLPQGWATPMERLRRPANIILMI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHH
LILLPWMINRLNLGQLDLDPRILDAMIAPIFQLFQRIVLPVAGCCHAVGHNHDHAEA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQIDMNDFVMRLVAIVLGVTIHEFSHAFVALRLGDPTAAQEGRVSLNPVVHFDPLGAFMM
CCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECCCEEEECCHHHHHH
FFVMLGYAPMAWGRPVPINVFRIRWGRRGFALSSLAGPTSNLLLASIFAIPLYINGGMWL
HHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCH
SEQLYTFLYYVIITNIGLAAFNMLPLPPLDGFNTFAGLLPQGWATPMERLRRPANIILMI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHH
LILLPWMINRLNLGQLDLDPRILDAMIAPIFQLFQRIVLPVAGCCHAVGHNHDHAEA
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]