Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159899579

Identifier: 159899579

GI number: 159899579

Start: 3867133

End: 3867555

Strand: Direct

Name: 159899579

Synonym: Haur_3060

Alternate gene names: NA

Gene position: 3867133-3867555 (Clockwise)

Preceding gene: 159899578

Following gene: 159899580

Centisome position: 60.93

GC content: 47.99

Gene sequence:

>423_bases
ATGATTTTGCAAGAGTTTGCCCGATATCATTCGCATTATTTTTTTGATCCCGATGACGCGATCTTAGCACCGTTGAAAAT
TTCCAATCCACGCGCCATTGATGGTTTGATTTGTATGCTGCCTGGCAGCGCAGTCGTGTTTTATCGTACTCCGCGCGGGC
TATTTTTGCGCTTGAATCGGCGTGAATTGCAAATTGGCGATGCTACCAGCGCCGATGTGATTCGCGGCGAAACCAACACC
CTGATTGTCTATGAACATGTGTATGAGCGTTTGCGCTGGAGTTACACCCCACCAGCATGGATCGCACCACTCGTGCCCAA
CGAACATGCTAGCCTCGACGAGGAGCATTTTGATTTTGGGGTGTTTATCTACAATGTGCTAAGCAACAAGCAACGCAAAC
GGCTAGTTTTTTCGCGCAAATAA

Upstream 100 bases:

>100_bases
GCAGCTAAGCGGTTGATCAGAGCTTCAAAGGTTGCGGCGAGTGTGTGAGATTGCCAGCAACCTACGCTGATTGCGCCAAC
TGCCATGGACGAGATAGCCT

Downstream 100 bases:

>100_bases
GCTTTCTTCGCAGATTCTTCACGGGTTCAGGCTACAATACAACCATCACCCAGTGGAGGCTTGTATGAGCGCAAAGATTT
TAATTGTTGAAGACGAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MILQEFARYHSHYFFDPDDAILAPLKISNPRAIDGLICMLPGSAVVFYRTPRGLFLRLNRRELQIGDATSADVIRGETNT
LIVYEHVYERLRWSYTPPAWIAPLVPNEHASLDEEHFDFGVFIYNVLSNKQRKRLVFSRK

Sequences:

>Translated_140_residues
MILQEFARYHSHYFFDPDDAILAPLKISNPRAIDGLICMLPGSAVVFYRTPRGLFLRLNRRELQIGDATSADVIRGETNT
LIVYEHVYERLRWSYTPPAWIAPLVPNEHASLDEEHFDFGVFIYNVLSNKQRKRLVFSRK
>Mature_140_residues
MILQEFARYHSHYFFDPDDAILAPLKISNPRAIDGLICMLPGSAVVFYRTPRGLFLRLNRRELQIGDATSADVIRGETNT
LIVYEHVYERLRWSYTPPAWIAPLVPNEHASLDEEHFDFGVFIYNVLSNKQRKRLVFSRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16325; Mature: 16325

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILQEFARYHSHYFFDPDDAILAPLKISNPRAIDGLICMLPGSAVVFYRTPRGLFLRLNR
CCHHHHHHHHCCEEECCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
RELQIGDATSADVIRGETNTLIVYEHVYERLRWSYTPPAWIAPLVPNEHASLDEEHFDFG
CEEEECCCCCCCEEECCCCEEEEEHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHH
VFIYNVLSNKQRKRLVFSRK
HHHHHHHCCCCHHCEEECCC
>Mature Secondary Structure
MILQEFARYHSHYFFDPDDAILAPLKISNPRAIDGLICMLPGSAVVFYRTPRGLFLRLNR
CCHHHHHHHHCCEEECCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
RELQIGDATSADVIRGETNTLIVYEHVYERLRWSYTPPAWIAPLVPNEHASLDEEHFDFG
CEEEECCCCCCCEEECCCCEEEEEHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHH
VFIYNVLSNKQRKRLVFSRK
HHHHHHHCCCCHHCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA