Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899574
Identifier: 159899574
GI number: 159899574
Start: 3859317
End: 3861164
Strand: Direct
Name: 159899574
Synonym: Haur_3055
Alternate gene names: NA
Gene position: 3859317-3861164 (Clockwise)
Preceding gene: 159899573
Following gene: 159899575
Centisome position: 60.81
GC content: 51.62
Gene sequence:
>1848_bases ATGTCGTCTAGGTCGATTAATCGCCGGCTATTGGTGCTTCAAGCAGGCTGGACAGTTGCTCAGGCCCAGTTATTGCTCGC CCATAGCCAAGCCGAATATGTGGTTGTTCAACGCACTGAGCCACAAATCTACTGGTATGTCTACCCTCTCGAAGTTGTCC AAGAACGCTTAAGCTACCATCACCCTGATATTGCGATCTACCTGGCGCTCAATTTGCAAGAAACCTCAGCTAGTTCGACT CTCAACAGCAATCAACTCGAAACCGCCGACTATTTAAGCGTGGTGCTTGATGATCAGCAACACTTGCAAGGCGTAGTTAA TCCGAGTGCTCAAGCCAAAGGCACAGAATTTGATCCATTCTTCAAGGCCTATCCCTCAGTAGTTGCCCAAAACCAAGCCC AACTTAACCAAGCCTTTGATCTAGCGGTTGGCTTTCGCGATACGCCTGATGCTGGCTTAATCGGTGGCCATAACCCGATT GTCATTCATGGCTTGCAAACTGATGAACGTTGCACAATTATGCTCAGCGGCGATGGCTTGCAGTTTGATCGAGAGCAAGC CGAATTGGCCTTTGACATTCAGGCAACCGTATTTTTTAAGGCCACGCCAACCCGCACAGGTCGCTGTGTAATCTATGTCG ATTATTATCGCCAACGCCAATTGGTGGGCCATGCCGAGCGGGTTGTGCTGGTCGATAGCAACGCTGAACCAGAACCTAGC AATGCTAGCCCGTTTGATTTTGGCTCAACTCCGGTCGATTTACTGATCAACCTGCGCCGTGATGGCGATACGTTCAAATG GACGGCAATGCCGCATGATCAAGCCTTTACACCGGTGCACAATTTGCCGAGCCAACAAGCCTTATCCGAGCAGGCTGCCC AAAATTGTGCCGTTGATCTGTTGGGTGCGGCGGTTAATCCAAGTTTATTGTTGGCGCAACGCGAACTTGAAGCGCTTGCC AGCGATCTAGGCCAATTTGTCCCAAGCCCAATTTGGCAATTACACAGCGATTTGGCCCAGAAATTGCAGCGTCCACTCAC GGTTTTGCTGCGCAGCAACGATTTGGCTTTGCCTTGGGAATTAGCGATGGTCGAAGCCCCTTTGCTAGCTGGCGATCAGC CGCTGTATTGGGCCGCCCAAACCCATTTTGCCCGTTGGTATATTCACCCCCAAGTTAGCCCAATGCCACCCGATCAACTC AACATTAGCCAAATTAGCGCAATTGCCTCACGCTATGGCTGGGATTCAGGCCAAGCTGAATTGGTGCATGCAGTTGATGA GCAAACCATGCTGCAAAACCAATGGCAAGCCCAAGCCTACGAAGCCACGATTCAGGCGCTTGATCCATTGTTGAGCCAAG CCACGACCCAAGCTGGCCATCTTTTACACTTTGCCGTGCATGGCCGCAGCCAACCCAACGCCCGCATTCAAGAAATTATC TTGGCTGATAATAATGCGATTTCGGCCAAAGCCTTGGTGGGCAATACTCGCCGTCGCCCGCCCCAATTTAGCTTTGTGTT TATCAATGCCTGCCAAGTTGCGACCCCAGGCCAGAGCTTAGGCCAAGCGGCGGGCTTCCCCGCCGAAATTCTCAAAAGTG GTGCGGCGGGCTTTGTTGCACCATTGTGGGAAGCTGATGATCAAGCAGCCGGAACGTTTGCCGCTCAATTTTATAGCCAA GCGTTTCAAGCCCAACCGTTGGGCGCAATTTTGCAACAATATCGCCTAAGTTATGTGGCCAATAGCACCACCACCCGCCT TGCCTATATCTTTTATGGCCATCCCGCCTTGCGTTTGGCCTATTCGAGCAAAGGAGCAACCCATGCCCAACAACCAAGTG CGGCTTGA
Upstream 100 bases:
>100_bases GTCGTATCCACAATGCAGCCTCACAACCTAGCCACAATTCAATAATTCCAATCCTCAAACGTTGATTTAATAAGTCACGC TGGATCATTGGGAGTTTGCT
Downstream 100 bases:
>100_bases TGGCAGCAGCCAAGCCCATGAAGTTGCCCCAAATTATCGGATTATTGCCCAAGGTATCACGGGCAATGCCGCCGTACCAA GCCAAGAGCCACGGCGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 615; Mature: 614
Protein sequence:
>615_residues MSSRSINRRLLVLQAGWTVAQAQLLLAHSQAEYVVVQRTEPQIYWYVYPLEVVQERLSYHHPDIAIYLALNLQETSASST LNSNQLETADYLSVVLDDQQHLQGVVNPSAQAKGTEFDPFFKAYPSVVAQNQAQLNQAFDLAVGFRDTPDAGLIGGHNPI VIHGLQTDERCTIMLSGDGLQFDREQAELAFDIQATVFFKATPTRTGRCVIYVDYYRQRQLVGHAERVVLVDSNAEPEPS NASPFDFGSTPVDLLINLRRDGDTFKWTAMPHDQAFTPVHNLPSQQALSEQAAQNCAVDLLGAAVNPSLLLAQRELEALA SDLGQFVPSPIWQLHSDLAQKLQRPLTVLLRSNDLALPWELAMVEAPLLAGDQPLYWAAQTHFARWYIHPQVSPMPPDQL NISQISAIASRYGWDSGQAELVHAVDEQTMLQNQWQAQAYEATIQALDPLLSQATTQAGHLLHFAVHGRSQPNARIQEII LADNNAISAKALVGNTRRRPPQFSFVFINACQVATPGQSLGQAAGFPAEILKSGAAGFVAPLWEADDQAAGTFAAQFYSQ AFQAQPLGAILQQYRLSYVANSTTTRLAYIFYGHPALRLAYSSKGATHAQQPSAA
Sequences:
>Translated_615_residues MSSRSINRRLLVLQAGWTVAQAQLLLAHSQAEYVVVQRTEPQIYWYVYPLEVVQERLSYHHPDIAIYLALNLQETSASST LNSNQLETADYLSVVLDDQQHLQGVVNPSAQAKGTEFDPFFKAYPSVVAQNQAQLNQAFDLAVGFRDTPDAGLIGGHNPI VIHGLQTDERCTIMLSGDGLQFDREQAELAFDIQATVFFKATPTRTGRCVIYVDYYRQRQLVGHAERVVLVDSNAEPEPS NASPFDFGSTPVDLLINLRRDGDTFKWTAMPHDQAFTPVHNLPSQQALSEQAAQNCAVDLLGAAVNPSLLLAQRELEALA SDLGQFVPSPIWQLHSDLAQKLQRPLTVLLRSNDLALPWELAMVEAPLLAGDQPLYWAAQTHFARWYIHPQVSPMPPDQL NISQISAIASRYGWDSGQAELVHAVDEQTMLQNQWQAQAYEATIQALDPLLSQATTQAGHLLHFAVHGRSQPNARIQEII LADNNAISAKALVGNTRRRPPQFSFVFINACQVATPGQSLGQAAGFPAEILKSGAAGFVAPLWEADDQAAGTFAAQFYSQ AFQAQPLGAILQQYRLSYVANSTTTRLAYIFYGHPALRLAYSSKGATHAQQPSAA >Mature_614_residues SSRSINRRLLVLQAGWTVAQAQLLLAHSQAEYVVVQRTEPQIYWYVYPLEVVQERLSYHHPDIAIYLALNLQETSASSTL NSNQLETADYLSVVLDDQQHLQGVVNPSAQAKGTEFDPFFKAYPSVVAQNQAQLNQAFDLAVGFRDTPDAGLIGGHNPIV IHGLQTDERCTIMLSGDGLQFDREQAELAFDIQATVFFKATPTRTGRCVIYVDYYRQRQLVGHAERVVLVDSNAEPEPSN ASPFDFGSTPVDLLINLRRDGDTFKWTAMPHDQAFTPVHNLPSQQALSEQAAQNCAVDLLGAAVNPSLLLAQRELEALAS DLGQFVPSPIWQLHSDLAQKLQRPLTVLLRSNDLALPWELAMVEAPLLAGDQPLYWAAQTHFARWYIHPQVSPMPPDQLN ISQISAIASRYGWDSGQAELVHAVDEQTMLQNQWQAQAYEATIQALDPLLSQATTQAGHLLHFAVHGRSQPNARIQEIIL ADNNAISAKALVGNTRRRPPQFSFVFINACQVATPGQSLGQAAGFPAEILKSGAAGFVAPLWEADDQAAGTFAAQFYSQA FQAQPLGAILQQYRLSYVANSTTTRLAYIFYGHPALRLAYSSKGATHAQQPSAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67657; Mature: 67526
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRSINRRLLVLQAGWTVAQAQLLLAHSQAEYVVVQRTEPQIYWYVYPLEVVQERLSYH CCCCCCCCEEEEEECCCHHHHHHHHEEECCCCEEEEEECCCEEEEEEEEHHHHHHHHHCC HPDIAIYLALNLQETSASSTLNSNQLETADYLSVVLDDQQHLQGVVNPSAQAKGTEFDPF CCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHEEECCHHHHHHHCCCCCCCCCCCCCHH FKAYPSVVAQNQAQLNQAFDLAVGFRDTPDAGLIGGHNPIVIHGLQTDERCTIMLSGDGL HHHHHHHHHCCHHHHHHHHHEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCC QFDREQAELAFDIQATVFFKATPTRTGRCVIYVDYYRQRQLVGHAERVVLVDSNAEPEPS CCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCCCCCC NASPFDFGSTPVDLLINLRRDGDTFKWTAMPHDQAFTPVHNLPSQQALSEQAAQNCAVDL CCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH LGAAVNPSLLLAQRELEALASDLGQFVPSPIWQLHSDLAQKLQRPLTVLLRSNDLALPWE HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEE LAMVEAPLLAGDQPLYWAAQTHFARWYIHPQVSPMPPDQLNISQISAIASRYGWDSGQAE HHEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH LVHAVDEQTMLQNQWQAQAYEATIQALDPLLSQATTQAGHLLHFAVHGRSQPNARIQEII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEE LADNNAISAKALVGNTRRRPPQFSFVFINACQVATPGQSLGQAAGFPAEILKSGAAGFVA EECCCCCEEHEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHCCCCCHHHHHCCCCCCEE PLWEADDQAAGTFAAQFYSQAFQAQPLGAILQQYRLSYVANSTTTRLAYIFYGHPALRLA ECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEE YSSKGATHAQQPSAA ECCCCCCCCCCCCCC >Mature Secondary Structure SSRSINRRLLVLQAGWTVAQAQLLLAHSQAEYVVVQRTEPQIYWYVYPLEVVQERLSYH CCCCCCCEEEEEECCCHHHHHHHHEEECCCCEEEEEECCCEEEEEEEEHHHHHHHHHCC HPDIAIYLALNLQETSASSTLNSNQLETADYLSVVLDDQQHLQGVVNPSAQAKGTEFDPF CCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHEEECCHHHHHHHCCCCCCCCCCCCCHH FKAYPSVVAQNQAQLNQAFDLAVGFRDTPDAGLIGGHNPIVIHGLQTDERCTIMLSGDGL HHHHHHHHHCCHHHHHHHHHEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCC QFDREQAELAFDIQATVFFKATPTRTGRCVIYVDYYRQRQLVGHAERVVLVDSNAEPEPS CCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCCCCCC NASPFDFGSTPVDLLINLRRDGDTFKWTAMPHDQAFTPVHNLPSQQALSEQAAQNCAVDL CCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH LGAAVNPSLLLAQRELEALASDLGQFVPSPIWQLHSDLAQKLQRPLTVLLRSNDLALPWE HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEE LAMVEAPLLAGDQPLYWAAQTHFARWYIHPQVSPMPPDQLNISQISAIASRYGWDSGQAE HHEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHH LVHAVDEQTMLQNQWQAQAYEATIQALDPLLSQATTQAGHLLHFAVHGRSQPNARIQEII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEE LADNNAISAKALVGNTRRRPPQFSFVFINACQVATPGQSLGQAAGFPAEILKSGAAGFVA EECCCCCEEHEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHCCCCCHHHHHCCCCCCEE PLWEADDQAAGTFAAQFYSQAFQAQPLGAILQQYRLSYVANSTTTRLAYIFYGHPALRLA ECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEE YSSKGATHAQQPSAA ECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA