Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899567
Identifier: 159899567
GI number: 159899567
Start: 3849483
End: 3850709
Strand: Direct
Name: 159899567
Synonym: Haur_3048
Alternate gene names: NA
Gene position: 3849483-3850709 (Clockwise)
Preceding gene: 159899559
Following gene: 159899569
Centisome position: 60.65
GC content: 50.45
Gene sequence:
>1227_bases ATGCGACGACGCATTCGTTGGCTACTGTTAATCGGTGGAGTTGTTGGCCTCGGTTTGGCGGTTGGAATCGGCTGGTGGCA ACGCGATCAACCAGCAGTTAAGCTCAATCGAACGCTCGTACAAGATCAAGCTGGCAATATTCAACTAATCGATAGTCATA ATCAACAATTAACGTTGACAAATGATGCCTCATCAATCGTGCAATATATTCAGGTTACGCCTGCACCCGATGGCCAACAC GTAGCCTATATTCAACTAACACCCACAGTGATCGAGATTCGAGTGCAGGCCTTCGATGGCAGCCCAGCTCGCACGGTTTT CAGCGATTTTAATCTGCGCCCATTTTATCTTTCCTGGTCACCCAATAGCCAAATGCTGGCCTTTTTAGCATCAGGCACAA CCATGGAATTATATGTTGTGCCCGCTGATGGCTCCGAAGTAGCGCATAAAGTGCGTGATGGACAACCATCGTATTTTGCT TGGAAGCCTGATAGCAGCGCTTTGTTATTGCACACTGGCGGCGGTACTCCGGTTGGCAACACCGCAGTCCACTCAGTTCA ATCCAAAGATTTAACTTTTTTCAAGGAAACCGCTGGCGATTTTCAAGCGCCTGCTTGGAATGCTGATGGCTCAGCGCGGG TGGTGGTAGTAGCTGATGGCGAAATCAATCAACTGATGCAGATTGATCAGGCCGGGCAACAGGCCTTGAGCGAACCAACC AGCGAAGGCTTTATGTTTGTGCTTTCGCCCGACCGTGCCAAAGTTGCCTACCAAACCTTTGGCCTACAAACCCGCTCAGG TTTGATGATTCAAACGATTGCTACTGGCAAAAGCCAAAGTTTCGAAACCGCCCGTCCCTTAGCATTTTTCTGGTCGCCAG ATGGGCGTTCGGTGGCCTTATTGGTTGCCGATGCTCGGCCACGCGGCCCCAGCGGCGATGCTGGAATTGTCAAAGTCAGT CGCCAAGCCCAAAGCGGCGTGCAGGTGCATTGGGAAGTACTAGATGTCGAATCGGGCCAAGTTAAACGGCTCAAATCGTT TGTACCAAGTGGACCTTTTTTGAATGTATTGCCCTATTTCGACCAATATGCCGCCTCGTTAACCTTCTGGTCGAGCGATA GCCAATATCTGCTCAACAATAGCAGCGATGGGGTTTGGCAAGTGCATGTTGAAACAGGCGCAGAACAGCAACTAACCAAG GGCGCATTTGGGGTTGCCGTGCCATAA
Upstream 100 bases:
>100_bases AAGTGGCTCGTAAGCCGATTCGTGATAGGCTTAATCCTATACCATTCAGTGGACTAATTGGGGATTCACTGGGCGCTACA ATTTAATAGGAGGCGATGTC
Downstream 100 bases:
>100_bases AATATGGATATTTTGCGTGCCCTCACCCCCTAGCCCCTCTCCCGCAAGCGAGCGAGGGAGAACCGTCCATCATGATGCTT GGAACGCCCCTCGCCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MRRRIRWLLLIGGVVGLGLAVGIGWWQRDQPAVKLNRTLVQDQAGNIQLIDSHNQQLTLTNDASSIVQYIQVTPAPDGQH VAYIQLTPTVIEIRVQAFDGSPARTVFSDFNLRPFYLSWSPNSQMLAFLASGTTMELYVVPADGSEVAHKVRDGQPSYFA WKPDSSALLLHTGGGTPVGNTAVHSVQSKDLTFFKETAGDFQAPAWNADGSARVVVVADGEINQLMQIDQAGQQALSEPT SEGFMFVLSPDRAKVAYQTFGLQTRSGLMIQTIATGKSQSFETARPLAFFWSPDGRSVALLVADARPRGPSGDAGIVKVS RQAQSGVQVHWEVLDVESGQVKRLKSFVPSGPFLNVLPYFDQYAASLTFWSSDSQYLLNNSSDGVWQVHVETGAEQQLTK GAFGVAVP
Sequences:
>Translated_408_residues MRRRIRWLLLIGGVVGLGLAVGIGWWQRDQPAVKLNRTLVQDQAGNIQLIDSHNQQLTLTNDASSIVQYIQVTPAPDGQH VAYIQLTPTVIEIRVQAFDGSPARTVFSDFNLRPFYLSWSPNSQMLAFLASGTTMELYVVPADGSEVAHKVRDGQPSYFA WKPDSSALLLHTGGGTPVGNTAVHSVQSKDLTFFKETAGDFQAPAWNADGSARVVVVADGEINQLMQIDQAGQQALSEPT SEGFMFVLSPDRAKVAYQTFGLQTRSGLMIQTIATGKSQSFETARPLAFFWSPDGRSVALLVADARPRGPSGDAGIVKVS RQAQSGVQVHWEVLDVESGQVKRLKSFVPSGPFLNVLPYFDQYAASLTFWSSDSQYLLNNSSDGVWQVHVETGAEQQLTK GAFGVAVP >Mature_408_residues MRRRIRWLLLIGGVVGLGLAVGIGWWQRDQPAVKLNRTLVQDQAGNIQLIDSHNQQLTLTNDASSIVQYIQVTPAPDGQH VAYIQLTPTVIEIRVQAFDGSPARTVFSDFNLRPFYLSWSPNSQMLAFLASGTTMELYVVPADGSEVAHKVRDGQPSYFA WKPDSSALLLHTGGGTPVGNTAVHSVQSKDLTFFKETAGDFQAPAWNADGSARVVVVADGEINQLMQIDQAGQQALSEPT SEGFMFVLSPDRAKVAYQTFGLQTRSGLMIQTIATGKSQSFETARPLAFFWSPDGRSVALLVADARPRGPSGDAGIVKVS RQAQSGVQVHWEVLDVESGQVKRLKSFVPSGPFLNVLPYFDQYAASLTFWSSDSQYLLNNSSDGVWQVHVETGAEQQLTK GAFGVAVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44370; Mature: 44370
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRIRWLLLIGGVVGLGLAVGIGWWQRDQPAVKLNRTLVQDQAGNIQLIDSHNQQLTLT CCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCEEEEHEEECCCCCCEEEEECCCCEEEEE NDASSIVQYIQVTPAPDGQHVAYIQLTPTVIEIRVQAFDGSPARTVFSDFNLRPFYLSWS CCHHHHEEEEEECCCCCCCEEEEEEECCEEEEEEEEEECCCCCHHHHHCCCCEEEEEEEC PNSQMLAFLASGTTMELYVVPADGSEVAHKVRDGQPSYFAWKPDSSALLLHTGGGTPVGN CCCCEEEEEECCCEEEEEEEECCCHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCC TAVHSVQSKDLTFFKETAGDFQAPAWNADGSARVVVVADGEINQLMQIDQAGQQALSEPT HHHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC SEGFMFVLSPDRAKVAYQTFGLQTRSGLMIQTIATGKSQSFETARPLAFFWSPDGRSVAL CCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEE LVADARPRGPSGDAGIVKVSRQAQSGVQVHWEVLDVESGQVKRLKSFVPSGPFLNVLPYF EEEECCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCEEECCCH DQYAASLTFWSSDSQYLLNNSSDGVWQVHVETGAEQQLTKGAFGVAVP HHHHEEEEEECCCCCEEEECCCCCEEEEEEECCCCHHHHCCCCEECCC >Mature Secondary Structure MRRRIRWLLLIGGVVGLGLAVGIGWWQRDQPAVKLNRTLVQDQAGNIQLIDSHNQQLTLT CCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCEEEEHEEECCCCCCEEEEECCCCEEEEE NDASSIVQYIQVTPAPDGQHVAYIQLTPTVIEIRVQAFDGSPARTVFSDFNLRPFYLSWS CCHHHHEEEEEECCCCCCCEEEEEEECCEEEEEEEEEECCCCCHHHHHCCCCEEEEEEEC PNSQMLAFLASGTTMELYVVPADGSEVAHKVRDGQPSYFAWKPDSSALLLHTGGGTPVGN CCCCEEEEEECCCEEEEEEEECCCHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCC TAVHSVQSKDLTFFKETAGDFQAPAWNADGSARVVVVADGEINQLMQIDQAGQQALSEPT HHHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC SEGFMFVLSPDRAKVAYQTFGLQTRSGLMIQTIATGKSQSFETARPLAFFWSPDGRSVAL CCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEE LVADARPRGPSGDAGIVKVSRQAQSGVQVHWEVLDVESGQVKRLKSFVPSGPFLNVLPYF EEEECCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCEEECCCH DQYAASLTFWSSDSQYLLNNSSDGVWQVHVETGAEQQLTKGAFGVAVP HHHHEEEEEECCCCCEEEECCCCCEEEEEEECCCCHHHHCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA