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The map label for this gene is yobV [H]

Identifier: 159899393

GI number: 159899393

Start: 3646394

End: 3647362

Strand: Direct

Name: yobV [H]

Synonym: Haur_2874

Alternate gene names: 159899393

Gene position: 3646394-3647362 (Clockwise)

Preceding gene: 159899391

Following gene: 159899394

Centisome position: 57.45

GC content: 42.83

Gene sequence:

>969_bases
ATGATGACAGCATTCTGTCACCATTCTAAAATTGTGGGCAAAAAGAGGATGCTGATGGATAAAGTGGAACGACTCATCTC
GATTATTATGATCTTGCTGAAAAAAGAACTTGTTTCAGCCAACGAATTCGCCCAATTATTCAACGTTTCTAAAAGGACGA
TCCTGCGCGATATGGATGCATTGAGTTTGGCGAACATCCCGATCTACGCGGTTCATGGGGTCAACGGCGGCTATGGCATT
ATGCAAGAATACAAGGTTGATAAACGCCTCTTAAGTAGCTCCGATTTACAAAATATATTAACTGCGCTCAGCGGACTAGA
ACAAATCTTCCTGCCTGAAGAGGTTGAAAGAACGATTAAAAAAATTGAGGCAATGGTTGGTCAATTGGCATTGAATCGTG
CGATTTACTTGTCATTTTATGCTTGGGAAGGTCGGTCTGAGCTACTTGAAACCCTCAAGACCTGCCAAGAATCTATATTA
AAGAAAAGACTGGTTTTGTTTGATTATACGGATAAAGATGGAACTATAACGCAGCGAATGATCGAACCCTACGAGCTGCA
TTTTAGCGAATCAACTTGGTATTTGAAAGGATTCTGTTTAGATCGCCAAGCCTATCGAAGTTTCAAATTAGCGCGGATCG
ATCACATGACGATGGATACCCGCGTATTTCCTTCGCGAGATAATAGCACTACACAAGGCCACGAAGCCCCGTACCTGCCG
CAACTGATCACGATTAAGGCTTGGATCGCGCCCAGCATCAAAGACCAAATTATCGAACGCTATGGGCGCAAAAATCTTGA
AGTTCAGCATTCTGGTGTATTGCTAGCAACTATGGAGATTCCACACAATCAGCTGGGATTTCAATTTTTAGCCAGCTTCG
GCAGGCAGCTCAAAGTTGTTGAGCCACAAGCCTATGTTGAAGATTTTCAGCAGTATTTAGCTCAAATGCTTGCCCACTAT
TCTTCATAA

Upstream 100 bases:

>100_bases
CAAAAATTCGGCAGAGCATGGGTTGTGCTGTTGTTGGTTCGGCAGTTTGTTAGCCAAAATCTCAACCGCCTGTTTGCGAT
GCGCGGAGTATAATAGCCCA

Downstream 100 bases:

>100_bases
AGGTCTCGGTTCAGCATCGCTGACCCAATGAATACAAATAATCAATGAATCGTAGCTAGTAATGGTAAGGATTGACAACT
AACGATAGTTACGTTATTAT

Product: helix-turn-helix type 11 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMTAFCHHSKIVGKKRMLMDKVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGI
MQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFYAWEGRSELLETLKTCQESIL
KKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCLDRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLP
QLITIKAWIAPSIKDQIIERYGRKNLEVQHSGVLLATMEIPHNQLGFQFLASFGRQLKVVEPQAYVEDFQQYLAQMLAHY
SS

Sequences:

>Translated_322_residues
MMTAFCHHSKIVGKKRMLMDKVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGI
MQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFYAWEGRSELLETLKTCQESIL
KKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCLDRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLP
QLITIKAWIAPSIKDQIIERYGRKNLEVQHSGVLLATMEIPHNQLGFQFLASFGRQLKVVEPQAYVEDFQQYLAQMLAHY
SS
>Mature_322_residues
MMTAFCHHSKIVGKKRMLMDKVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGI
MQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFYAWEGRSELLETLKTCQESIL
KKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCLDRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLP
QLITIKAWIAPSIKDQIIERYGRKNLEVQHSGVLLATMEIPHNQLGFQFLASFGRQLKVVEPQAYVEDFQQYLAQMLAHY
SS

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 37172; Mature: 37172

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTAFCHHSKIVGKKRMLMDKVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLANIPIYAVHGVNGGYGIMQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIK
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KIEAMVGQLALNRAIYLSFYAWEGRSELLETLKTCQESILKKRLVLFDYTDKDGTITQRM
HHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHH
IEPYELHFSESTWYLKGFCLDRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLP
CCCHHEEECCCCEEEEEEEECHHHHHHHHHHHHHHHEECCEECCCCCCCCCCCCCCCCCC
QLITIKAWIAPSIKDQIIERYGRKNLEVQHSGVLLATMEIPHNQLGFQFLASFGRQLKVV
HHHEEHHHHCCCHHHHHHHHHCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHCCCEEEE
EPQAYVEDFQQYLAQMLAHYSS
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMTAFCHHSKIVGKKRMLMDKVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLANIPIYAVHGVNGGYGIMQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIK
HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KIEAMVGQLALNRAIYLSFYAWEGRSELLETLKTCQESILKKRLVLFDYTDKDGTITQRM
HHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHH
IEPYELHFSESTWYLKGFCLDRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLP
CCCHHEEECCCCEEEEEEEECHHHHHHHHHHHHHHHEECCEECCCCCCCCCCCCCCCCCC
QLITIKAWIAPSIKDQIIERYGRKNLEVQHSGVLLATMEIPHNQLGFQFLASFGRQLKVV
HHHEEHHHHCCCHHHHHHHHHCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHCCCEEEE
EPQAYVEDFQQYLAQMLAHYSS
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]