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The map label for this gene is yhjD [C]

Identifier: 159899321

GI number: 159899321

Start: 3562223

End: 3563329

Strand: Direct

Name: yhjD [C]

Synonym: Haur_2802

Alternate gene names: 159899321

Gene position: 3562223-3563329 (Clockwise)

Preceding gene: 159899320

Following gene: 159899322

Centisome position: 56.13

GC content: 47.24

Gene sequence:

>1107_bases
ATGAAAGAATGGGTAACCAAAACCGCTTGGCCGTTAACTCAACGCACCTTTAAAGCATGGACGGTCGATGATTGTTCACG
CATGGCAGCATCGTTGGCCTACTATGCGGTATTTTCAATCTTCCCGTTGATTTTGCTGTTGCTTTCGATTTTGGGTTTTT
GGCTACGCTTGCAAGGCGATACTAACACCAATGCTGAAGAAACTTTAGTTAATTCGTTGATGCAAGTCTTTCAAACCAGC
CCACAAGTTGGGGTTGATGATTCAGCAATACGTACAGCCCTCACCGAAATTCTGAAAAGCCTCAGCCAACAAGCTGGCAC
CAATGCTCCAATTGCGTTGGCCACTACTTTTTTTGCCGCCAGCGGGATTTTCGTGCAAATTGATAAAGCCTTTGATGTGA
TTTGGGATATTCAACCGCAGCAAGGCAACTTTTTGCATACTGTCAAAAGCACCTTGATCGAACGTGGCAAAGCCTTTGCC
TTGGTATTGGTGATTGGCTTATTGCTGATTAGCTCGTTGATTCTTTCCTCAGTCTTGCAAGCCTTGGAAAATCTCTCCAA
AAGCTTCGATTTGCCTGGAGTTGGGGTTGGGTGGCAAATTTTCACGTTTGCAACGGCCTTTGCTATCAATGTATTAGTAT
TCTTTTTATTATTTTTTGCCATGCCCAAGCCCAAAATGCGCTGGCGTGATGTCTTGCCCGGGGCGATTCTGACCGCTGCG
CTGTGGGAAATTGGCAAAATTGTGCTTTCGCTGTTTCTTGGCGGCAATAAATATACCGCTTCAACCACTGTGGCGGCTTT
TATCGCGCTTTTGGCTTGGATCTACTATGCCAGCCAAATTATCTTTTTTGGAGCCGAGTTTTGTCGGGTGTATACCGATT
GGAATAGCACCAAACGCGCTAAGCAAGCGCCAGCGGTCGCCTTACCGACTCCGCCCGATTTACCAACCACAGCCTTGCCG
CCAGCTCTGGCTACGGCGCAACAAAAAGCCAGCTATGCGGTTGGTGGCACAGCCTTGGGCGTGGTTTTAGGGGTGCTGAT
GAGTATTGTTGGTACGCTAGTTGCGATTATCCAATTTATTCAAACCTTGCGTAAAGGCAAAGCCTAG

Upstream 100 bases:

>100_bases
TGGATCAGACTCAAGCTGCGTTGGGCAATGCTGGCATGCTCAATCGTGAGCAATCGTAGTTAGTTCGGGCACGAGCCTAG
AGCAAGATGAGGCGCAATTC

Downstream 100 bases:

>100_bases
CGTTATTGAGGATGTGAATATGAGCGACCCAAGCGAACAGCCAACGCCAATCGAGCCACCAGCGCCAGAACCCATGCCGA
TCGGCGACCCGCCGCTAGAT

Product: ribonuclease BN

Products: NA

Alternate protein names: Ribonuclease Bn; Ribonuclease; Ribonuclease BN-Like Family Protein; YihY Family Protein; Ribonuclease RNAse BN Transmembrane Protein; Exoribonuclease BN Transmembrane Protein; TRNA-Processing RNAse BN; Ribonuclease BN-Like Family; Ribonuclease BN Family Protein; BrkB Transmembrane Protein; BrkB-Like Protein; Serum Resistance Protein; BrkB Protein

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKEWVTKTAWPLTQRTFKAWTVDDCSRMAASLAYYAVFSIFPLILLLLSILGFWLRLQGDTNTNAEETLVNSLMQVFQTS
PQVGVDDSAIRTALTEILKSLSQQAGTNAPIALATTFFAASGIFVQIDKAFDVIWDIQPQQGNFLHTVKSTLIERGKAFA
LVLVIGLLLISSLILSSVLQALENLSKSFDLPGVGVGWQIFTFATAFAINVLVFFLLFFAMPKPKMRWRDVLPGAILTAA
LWEIGKIVLSLFLGGNKYTASTTVAAFIALLAWIYYASQIIFFGAEFCRVYTDWNSTKRAKQAPAVALPTPPDLPTTALP
PALATAQQKASYAVGGTALGVVLGVLMSIVGTLVAIIQFIQTLRKGKA

Sequences:

>Translated_368_residues
MKEWVTKTAWPLTQRTFKAWTVDDCSRMAASLAYYAVFSIFPLILLLLSILGFWLRLQGDTNTNAEETLVNSLMQVFQTS
PQVGVDDSAIRTALTEILKSLSQQAGTNAPIALATTFFAASGIFVQIDKAFDVIWDIQPQQGNFLHTVKSTLIERGKAFA
LVLVIGLLLISSLILSSVLQALENLSKSFDLPGVGVGWQIFTFATAFAINVLVFFLLFFAMPKPKMRWRDVLPGAILTAA
LWEIGKIVLSLFLGGNKYTASTTVAAFIALLAWIYYASQIIFFGAEFCRVYTDWNSTKRAKQAPAVALPTPPDLPTTALP
PALATAQQKASYAVGGTALGVVLGVLMSIVGTLVAIIQFIQTLRKGKA
>Mature_368_residues
MKEWVTKTAWPLTQRTFKAWTVDDCSRMAASLAYYAVFSIFPLILLLLSILGFWLRLQGDTNTNAEETLVNSLMQVFQTS
PQVGVDDSAIRTALTEILKSLSQQAGTNAPIALATTFFAASGIFVQIDKAFDVIWDIQPQQGNFLHTVKSTLIERGKAFA
LVLVIGLLLISSLILSSVLQALENLSKSFDLPGVGVGWQIFTFATAFAINVLVFFLLFFAMPKPKMRWRDVLPGAILTAA
LWEIGKIVLSLFLGGNKYTASTTVAAFIALLAWIYYASQIIFFGAEFCRVYTDWNSTKRAKQAPAVALPTPPDLPTTALP
PALATAQQKASYAVGGTALGVVLGVLMSIVGTLVAIIQFIQTLRKGKA

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40040; Mature: 40040

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEWVTKTAWPLTQRTFKAWTVDDCSRMAASLAYYAVFSIFPLILLLLSILGFWLRLQGD
CCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
TNTNAEETLVNSLMQVFQTSPQVGVDDSAIRTALTEILKSLSQQAGTNAPIALATTFFAA
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SGIFVQIDKAFDVIWDIQPQQGNFLHTVKSTLIERGKAFALVLVIGLLLISSLILSSVLQ
CCCEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ALENLSKSFDLPGVGVGWQIFTFATAFAINVLVFFLLFFAMPKPKMRWRDVLPGAILTAA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
LWEIGKIVLSLFLGGNKYTASTTVAAFIALLAWIYYASQIIFFGAEFCRVYTDWNSTKRA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
KQAPAVALPTPPDLPTTALPPALATAQQKASYAVGGTALGVVLGVLMSIVGTLVAIIQFI
HHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QTLRKGKA
HHHHCCCC
>Mature Secondary Structure
MKEWVTKTAWPLTQRTFKAWTVDDCSRMAASLAYYAVFSIFPLILLLLSILGFWLRLQGD
CCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
TNTNAEETLVNSLMQVFQTSPQVGVDDSAIRTALTEILKSLSQQAGTNAPIALATTFFAA
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SGIFVQIDKAFDVIWDIQPQQGNFLHTVKSTLIERGKAFALVLVIGLLLISSLILSSVLQ
CCCEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ALENLSKSFDLPGVGVGWQIFTFATAFAINVLVFFLLFFAMPKPKMRWRDVLPGAILTAA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
LWEIGKIVLSLFLGGNKYTASTTVAAFIALLAWIYYASQIIFFGAEFCRVYTDWNSTKRA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
KQAPAVALPTPPDLPTTALPPALATAQQKASYAVGGTALGVVLGVLMSIVGTLVAIIQFI
HHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QTLRKGKA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA