| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is malT [H]
Identifier: 159898252
GI number: 159898252
Start: 2012716
End: 2015328
Strand: Reverse
Name: malT [H]
Synonym: Haur_1728
Alternate gene names: 159898252
Gene position: 2015328-2012716 (Counterclockwise)
Preceding gene: 159898254
Following gene: 159898251
Centisome position: 31.75
GC content: 50.36
Gene sequence:
>2613_bases ATGGTGATGCCAATATTAACGACTAAATGCTATATTCCAGTTCCGCGTTTGAATGGTGTCGTGCGTTCGCAGCTGCTCGA ACGCTTGAAAGAACGTCATGATCGGCGTTTAACGGTGGTGTCGGCTCCGGCTGGCTTTGGCAAAACGATGCTTGTAAGTC AGTGGATTGCGAATTGCAAGCAGCCTGTCGCCTGGCTGACGCTTGATCAAAACGATAATGATCTGGCGCGGTTTTTGGTG TATCTTGTCGCAGCCTTACAAACAATTGAGCCAACATTTGGCTTAGAAATTATTCAGCGGTTACAAGCCCCAGAATTGCC CTCAACTGAAACCATCTTGTTCTTGCTGCTGAATCAGCTGGCGACAATTGAGCAACAATCGATTTTAGTGCTTGATGATT ACCATTGGCTGACGGCCAAACCAATTGCTGAGGCCATGCGCTTGCTGCTTGAACGCTTGCCACCCCAATTGCAAATCGTT GTTATTACCCGCGAGGAGCCTGATCTGCCCTTGGCACGGCTTCGAGCACGCCATCAATTAACTGAACTGCGCGTGGCCGA TTTACGCTTCACGGTCGCGGAAGCCCACCAATTTCTCAGCCAAACAATGGAATTAGATCTTTTAGCATCAGCAAGCCAAG CCCTTACCGATCAAACTGAAGGCTGGATTACTGGCTTGCAATTGGCGGCAATTTCCATGCAAGGCCAGCAAGCATCAAGC CCGCTGATTGATGGCTTTACTGGCAATCATCGGTTTGTATTGGATTATTTGCTTGAAGAGGTATTACAGCAACAACCTGC CGAGATCCAGACATTTTTGTTGGTTACTTCGCTGCTTGATCGGATGTGTGGCTCGTTGTGTGAGGCAGTTTTGGCTGCTG CTCCTGCTTCGGGCGCGGCAACTTTAGCCTATCTTGAACGTGCCAATCTGTTTATCGTGCCGCTCGATCATGAACGCCAT TGGTATCGCTATCACCATTTATTTGCCGATTTGCTGCGCCAGCGCTTGGCGATTAGCTCATTAGGCCATGATCTGCCTGA GTTGCATCGACGAGCCAGTCATTGGTACGAGGCTCATGGATTTGGGATTGAGGCCTTTCGCCATGCCGCCGCTGCCAATG ATGTTGCGCATATCGAACGCTTGATTGATCAGCAGCAGATTTCGTTACACTTTCGCGGTACGGTCACAACCTTGCTCGAT TGGTTGGCAACTGTGCCAAAAAGTGTTTTTGAGCAGCAGCCCTCGTTGTGGTGGCGGCATGCGTCGTTGATGTTGATGCT TGGCCAAACCTCCGGTGTTGCCGAAAAACTTGCTGCTGCCGAAGCCGCGCTCCAAAGCTTCCCAGATGATCATCAAACGC GCAACTTAATTGGCCAGATTGCAGCATCGCGGGCAATTTTGTTGTTGGCTCAATACCAATTCGCGTCAACGCTGGCGCAA TCGCAGCGAGCATTAGAATATTTGGCCGCTGATAATGTGTTTTCGCTGACCTCGGCCTACTGGACGTTGGGCTTTGGCTA TTTGGCTCATGGCGATCGGGCGGCGGCACGCCAAGCCCTGACCAAATCTGTTAGTTTGGCCCAAGCATCGGGTAGCAGCT TTATCCGAATTTTGGCAACGATTGGTCTGGGCCAGCTGCAAGAATCAGAAAATCAACTGTATCAAGCCGCTGCAACCTAC CAGCAAATTCTTGCATTGGCGGGCGAGCAACCGCTGCAAATTATCTACGAAGCCTACTTAGGTTTAGCGCGAATTTATTA TCAATGGAATCAGCTAGATGCCGCTGAGCGTTATGCCCAACAAAGCCTTGATTTAGCCCAGCAATACGACCGCTTGATTG ATCGTTCGATTATTTGCGAAATTTGGTTGGTGCGCTTGCAACTGGCGCGGAGAGCCAACGAACAGGCTGCGACCAAGCTG GGGCAACTGGCCCAAACGGTGCGTCAACAGAACTTTACTCAGCGGCTTCCAGAGATTATCACGACCCAGATTGGCGTGCT GTTGGCGCAAGCAGAGCTTCAGGCCGCCGCCGAATTAGCCCAAACAATTGATTCCCCATTAATTCAGGCGAAAGTTTTGC TCGCTCAGGCCAATGCGGCGGCGGCTTTGGAATTACTACAACCCTTGATCGAGCAATTTCAAGCCAAGGGCTGGCTTGAT CAACAGCTGCATGGCTTGATTTTGCAGGCCGTAGCCCAGCAACAACAAGGCCAAAAAGCGCCTGCACTTCGTACATTACA AGCGGCTTTGGCCATGGCTGAACCAGGTGGCTTGATAAGAATTTTTATTGATGAAGGGCCAGAGTTGAAACAGCTATTGC GCGAGTTGATTGGGCGTGGGTTGGGTAATGCTTATGCTCGCCAAATTTTAGCCGCCTTTGGGCAAATGCCATTGATGCCA AGCGCTCAAGTTGCGCTGATCGAGCCATTAAGTGAGCGCGAGCTTGAGGTATTGGGTTTGATTGCTGCTGGGCTTTCGAA TCAGGCGATTGCTGATCAATTGTATCTTTCGCTGTATACGGTCAAAGCCCATGTGCGCAATATTTATGGCAAACTCAGCG TTAATAATCGCACTTTGGCGGTGGCCAAAGCCCAAGAGCTTGCCATATTGTAA
Upstream 100 bases:
>100_bases CTAGCGCCATCTACAAAATAAGCGCTCAGATTGCGTCTGATTATAGCAAACGCACTGGTTTGCGAGGCTGACCTGAACGG TTTGCTTTATAATTAAGGCC
Downstream 100 bases:
>100_bases AGATTTACTGATTAGTCCTTTCCAATAGTTCTTTAGAGCTATGAGTTGTTGCTGCTCCATCGGCTATGCTGGCCCAAGCA ATTATCGCTTGATGGAGACA
Product: ATP-dependent transcription regulator LuxR
Products: NA
Alternate protein names: ATP-dependent transcriptional activator malT [H]
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCKQPVAWLTLDQNDNDLARFLV YLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQLATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIV VITREEPDLPLARLRARHQLTELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASS PLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAATLAYLERANLFIVPLDHERH WYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHGFGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLD WLATVPKSVFEQQPSLWWRHASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQ SQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILATIGLGQLQESENQLYQAAATY QQILALAGEQPLQIIYEAYLGLARIYYQWNQLDAAERYAQQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKL GQLAQTVRQQNFTQRLPEIITTQIGVLLAQAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELLQPLIEQFQAKGWLD QQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEGPELKQLLRELIGRGLGNAYARQILAAFGQMPLMP SAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKAQELAIL
Sequences:
>Translated_870_residues MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCKQPVAWLTLDQNDNDLARFLV YLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQLATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIV VITREEPDLPLARLRARHQLTELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASS PLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAATLAYLERANLFIVPLDHERH WYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHGFGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLD WLATVPKSVFEQQPSLWWRHASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQ SQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILATIGLGQLQESENQLYQAAATY QQILALAGEQPLQIIYEAYLGLARIYYQWNQLDAAERYAQQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKL GQLAQTVRQQNFTQRLPEIITTQIGVLLAQAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELLQPLIEQFQAKGWLD QQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEGPELKQLLRELIGRGLGNAYARQILAAFGQMPLMP SAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKAQELAIL >Mature_870_residues MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCKQPVAWLTLDQNDNDLARFLV YLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQLATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIV VITREEPDLPLARLRARHQLTELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASS PLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAATLAYLERANLFIVPLDHERH WYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHGFGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLD WLATVPKSVFEQQPSLWWRHASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQ SQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILATIGLGQLQESENQLYQAAATY QQILALAGEQPLQIIYEAYLGLARIYYQWNQLDAAERYAQQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKL GQLAQTVRQQNFTQRLPEIITTQIGVLLAQAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELLQPLIEQFQAKGWLD QQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEGPELKQLLRELIGRGLGNAYARQILAAFGQMPLMP SAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKAQELAIL
Specific function: Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides. Binds and recognizes a DNA motif (called the malT box):5'-GGA[TG]GA-3' [H]
COG id: COG2909
COG function: function code K; ATP-dependent transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI2367223, Length=917, Percent_Identity=28.7895310796074, Blast_Score=260, Evalue=3e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 96683; Mature: 96683
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS50293 TPR_REGION ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCK CCCCEEECCCEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCC QPVAWLTLDQNDNDLARFLVYLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQL CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIVVITREEPDLPLARLRARHQL HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH TELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC PLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAA CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH TLAYLERANLFIVPLDHERHWYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHG HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC FGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLDWLATVPKSVFEQQPSLWWRH CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHH ASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQ HHHHHEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILAT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH IGLGQLQESENQLYQAAATYQQILALAGEQPLQIIYEAYLGLARIYYQWNQLDAAERYAQ HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKLGQLAQTVRQQNFTQRLPEII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TTQIGVLLAQAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELLQPLIEQFQAKGWLD HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH QQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEGPELKQLLRELIGRG HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC LGNAYARQILAAFGQMPLMPSAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYT CCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VKAHVRNIYGKLSVNNRTLAVAKAQELAIL HHHHHHHHHHEEEECCCEEEEECHHHHCCC >Mature Secondary Structure MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCK CCCCEEECCCEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCC QPVAWLTLDQNDNDLARFLVYLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQL CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIVVITREEPDLPLARLRARHQL HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH TELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC PLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAA CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH TLAYLERANLFIVPLDHERHWYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHG HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC FGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLDWLATVPKSVFEQQPSLWWRH CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHH ASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQ HHHHHEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILAT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH IGLGQLQESENQLYQAAATYQQILALAGEQPLQIIYEAYLGLARIYYQWNQLDAAERYAQ HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKLGQLAQTVRQQNFTQRLPEII HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TTQIGVLLAQAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELLQPLIEQFQAKGWLD HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH QQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEGPELKQLLRELIGRG HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCC LGNAYARQILAAFGQMPLMPSAQVALIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYT CCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VKAHVRNIYGKLSVNNRTLAVAKAQELAIL HHHHHHHHHHEEEECCCEEEEECHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA