| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898174
Identifier: 159898174
GI number: 159898174
Start: 1917318
End: 1917890
Strand: Reverse
Name: 159898174
Synonym: Haur_1650
Alternate gene names: NA
Gene position: 1917890-1917318 (Counterclockwise)
Preceding gene: 159898175
Following gene: 159898173
Centisome position: 30.22
GC content: 55.15
Gene sequence:
>573_bases ATGACGCGGTTCATTCGAAGCCTAGTAATTCTGCTGATCGCTCTTGTGGCTCTACCAACTCAACCTTCACATGCGGCGGA TGTTGGGCCATTGGCATTAACCCCAACCGAGCCACCAACTCCAACCAATACACCCTTACCGACGAATACTCCTGAACCAA TCATCCCAACCAATACACCCTTGCCAACCAACACCCCAGAACCACGAGTTACGGTTGAGCCAACCAGCATTGCTCAGCCA ACTGGGGTAGCACCAACTCAAGCTCCAAGCATTGAGCCAACCGCCACGCCAATAATCTCAATGCCAGGCATCACGGCGAC GGCAACTCCTGAGCAAAGCATTCCTAGCCCAACTCCCAGCCCATCGCCAACCCCCGAACAACCAAGTGCAACCCCCATGC CCAGCGCAACTGCGATGCCGCAGCCAACTGCCAAGCCAGCAGCGCCACCAGCAGGCAATCAACCACCATTGCCACGCACC AGTAGCGCTGATACTGCCGCCTTATGGTTTATTGGCTTATTGGGTTTATTAGTCGCTCTGATCGGCTTTGGCATCCAACG ACGTGCCGCTTAG
Upstream 100 bases:
>100_bases CGAATTGTCCTTATTCAATGTTTCATTGCTTGGGTCATGCCCGCTTTCACGATTCGCGATCAGTGGAACAGGCCAGCCCT TTGATGTGGGAGTAGCTTGT
Downstream 100 bases:
>100_bases TGTTAACCAACGAGGTTTAAACGTATGAAGCAAGCATCCTCTCGTTATTCATTCAGCACACTGGTTGTGTGTTGCACCTT ATTGGTAGCATTCGCAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MTRFIRSLVILLIALVALPTQPSHAADVGPLALTPTEPPTPTNTPLPTNTPEPIIPTNTPLPTNTPEPRVTVEPTSIAQP TGVAPTQAPSIEPTATPIISMPGITATATPEQSIPSPTPSPSPTPEQPSATPMPSATAMPQPTAKPAAPPAGNQPPLPRT SSADTAALWFIGLLGLLVALIGFGIQRRAA
Sequences:
>Translated_190_residues MTRFIRSLVILLIALVALPTQPSHAADVGPLALTPTEPPTPTNTPLPTNTPEPIIPTNTPLPTNTPEPRVTVEPTSIAQP TGVAPTQAPSIEPTATPIISMPGITATATPEQSIPSPTPSPSPTPEQPSATPMPSATAMPQPTAKPAAPPAGNQPPLPRT SSADTAALWFIGLLGLLVALIGFGIQRRAA >Mature_189_residues TRFIRSLVILLIALVALPTQPSHAADVGPLALTPTEPPTPTNTPLPTNTPEPIIPTNTPLPTNTPEPRVTVEPTSIAQPT GVAPTQAPSIEPTATPIISMPGITATATPEQSIPSPTPSPSPTPEQPSATPMPSATAMPQPTAKPAAPPAGNQPPLPRTS SADTAALWFIGLLGLLVALIGFGIQRRAA
Specific function: Unknown
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19400; Mature: 19268
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFIRSLVILLIALVALPTQPSHAADVGPLALTPTEPPTPTNTPLPTNTPEPIIPTNTP CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC LPTNTPEPRVTVEPTSIAQPTGVAPTQAPSIEPTATPIISMPGITATATPEQSIPSPTPS CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCC PSPTPEQPSATPMPSATAMPQPTAKPAAPPAGNQPPLPRTSSADTAALWFIGLLGLLVAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH IGFGIQRRAA HCCCHHHCCC >Mature Secondary Structure TRFIRSLVILLIALVALPTQPSHAADVGPLALTPTEPPTPTNTPLPTNTPEPIIPTNTP HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC LPTNTPEPRVTVEPTSIAQPTGVAPTQAPSIEPTATPIISMPGITATATPEQSIPSPTPS CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCC PSPTPEQPSATPMPSATAMPQPTAKPAAPPAGNQPPLPRTSSADTAALWFIGLLGLLVAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH IGFGIQRRAA HCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA