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The map label for this gene is yxjL [H]

Identifier: 159898124

GI number: 159898124

Start: 1855953

End: 1856576

Strand: Reverse

Name: yxjL [H]

Synonym: Haur_1600

Alternate gene names: 159898124

Gene position: 1856576-1855953 (Counterclockwise)

Preceding gene: 159898125

Following gene: 159898123

Centisome position: 29.25

GC content: 52.56

Gene sequence:

>624_bases
ATGATTCGTGTTTTAGTCGTTGATGATCATCCAGTTGTGCGCCACGGCTTGATGGCGATGCTCGGCTGGGAGCAGGATTT
CGAGCCAGTTGGTGATGCTGCTGATGGTCAACAAGCAGTTAACTTGATCGAGCAACAACAACCTGATGTGGTGTTACTTG
ATTTGCGTTTGCCGCAACTGAGTGGCATCGAAGTGATGCGCCATACCCGTGCCAGCGCCCCCAATACCCGTTTTCTGGTG
CTCACAACCTATGATACCGACGAATACATTGGGCCAGCCTTGAACGCTGGAGCCGCTGGATATTTACTCAAAGATGCGAG
TCCTGAGGAAGTTTTTCGGGCGATTCGCTCAATTTATGAGGGTGGTGCCGCCTTGCAATCGGGTATTGCGGCGCGAGTGC
TCAAACGACTAGCCACCGAGCCAGCCGAAGATGAGCTTTCGCAGCGTGAGCTTGATGTGTTGCAATTACTGGTACGGGGC
GAAAGCAACAAAGCCATTGCCCTCAGCCTCAACATCTCCGAAAACACGATCAAATCGCATGTCAGCCATATTTTTAGTAA
GCTCGATGTGCGCAGCAGGGCTGAGGCCGTGGCGGTTGCCTTGCAACGAGGCCTTGTAAAGTAG

Upstream 100 bases:

>100_bases
GGTGGTAGCCTACAATTAAGCAATCAGCATGGCGCGTTGGTTCATGTGCAAATTCCCTACAATCTGCCCCAAACAGCCTT
GGTTGAAATGGAGTAACCTA

Downstream 100 bases:

>100_bases
TTTAGTTAGGCTATGGAAACCGAACTTAAGCAGAGGCGCAGAGAGTTCTAATTAAACTATAGCCATATATTCTCTGCGCC
TCTGCGTTAAAACCTCATCC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MIRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLSGIEVMRHTRASAPNTRFLV
LTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGGAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRG
ESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRGLVK

Sequences:

>Translated_207_residues
MIRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLSGIEVMRHTRASAPNTRFLV
LTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGGAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRG
ESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRGLVK
>Mature_207_residues
MIRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLSGIEVMRHTRASAPNTRFLV
LTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGGAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRG
ESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRGLVK

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=205, Percent_Identity=37.5609756097561, Blast_Score=134, Evalue=3e-33,
Organism=Escherichia coli, GI1788222, Length=210, Percent_Identity=35.2380952380952, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787473, Length=198, Percent_Identity=35.8585858585859, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790102, Length=195, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1786747, Length=199, Percent_Identity=26.6331658291457, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788712, Length=191, Percent_Identity=24.0837696335079, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082052, Length=104, Percent_Identity=33.6538461538462, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1787375, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788546, Length=195, Percent_Identity=25.6410256410256, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788550, Length=102, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22642; Mature: 22642

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQL
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
SGIEVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYE
CCHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHC
GGAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSH
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHH
VSHIFSKLDVRSRAEAVAVALQRGLVK
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQL
CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
SGIEVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYE
CCHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHC
GGAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSH
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHH
VSHIFSKLDVRSRAEAVAVALQRGLVK
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]