| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is ydaO [H]
Identifier: 159897720
GI number: 159897720
Start: 1369675
End: 1371558
Strand: Direct
Name: ydaO [H]
Synonym: Haur_1191
Alternate gene names: 159897720
Gene position: 1369675-1371558 (Clockwise)
Preceding gene: 159897719
Following gene: 159897721
Centisome position: 21.58
GC content: 48.04
Gene sequence:
>1884_bases ATGTTGACCCAATTGAAGGGGGTTTTAGTGGGGAATCCGTTGGAGACTGCGGCCCAATCGCATGAGCGCTTGGATAAAAA AACCGCGCTCGCAGTCTTCTCGTCTGATGCTTTATCATCAGTCGCCTATGCCACCGAAGAAATGCTTGTCCACCTTGTGC CAGCCGGCATCATTGCGTTTAGCTCATCGCTGTGGCTGGGCATCGGCATCGCTGTTTTGTTGATGATCGTGACGATCTCG TATCGCCAAACAATCACGGCCTATCCCAGCGGTGGTGGCTCGTACATCGTGGCCTCGGATAATTTAGGCACTCTTCCGGG TTTGATCGCTGGCGGTGCATTATTAATTGACTATATTCTGACTGTGGCAGTGTCGATCTCGTCGGGCGTTTCGCAGTTGA TCTCATTGGTCGAGCCGTTGCGTGATTATCGAATTGAAATTTGTTTGATTGGGATTCTCATTCTGACCTTGGCCAATTTG CGTGGGATTCGCGAATCGGGGGCGATTTTCTCGCTGCCTACCTACTTTTTTATTACAGTCATTATGTTGACCCTCGGCTA TGGCTTTTACAAACAATTTACAGGCGATATTCAGCCGTTAGTGCTTTCGGATAACCTGATGGGGCCACATGAACAAAGCT TCTCGCCATTTGGAACTGAGGCTATGACCGCCTTTTTGCTGATGGGCGCGTTTGCCTCGGGCTGTTCAGCATTAACCGGG GTTGAGGCAATTTCGAATGGCGTACCAGCATTTCGCAAGCCAGAGCCACACAACGCTCGCGTCACCATGGTTTGGATGGC GGGATTACTATTAGTGATGTTCGCTGGCATTACCTGGTTTGCTCACAAGTATGGCGCACGCCCGCAATTCAACGAAACCG TGATTTCGCAAATTGGGCGAGGCATTTGGGGGCGCACGACGGGCAGCGAAACGGGCTTCCCCAAAGTGATGCATGGCATG TTGCAAATCTCAACCGCCGCAATTTTGCTGGTTGCAGCCAATACCAGCTACGCCGATTTCCCACGATTGATGTCGTTGTT GGCCCGAGATGGCTTCTTGCCCCGCCAATTCTCATCATTGGGCGATCGTTTGGTCTTCTCGAATGGGATTCTTTTCTTGG CGGTTGCTGCTGCACTGTTGGTGATTGGTTTTGATGGCTCGGTTACCAACTTAATTCCCTTGTATGCGGTTGGCGTGTTT CTCTCATTCACACTCTCGCAATCGGGGATGGTGTTGCGCTGGTTGCGGCTCAAAACCAAGGGTTGGCAACTTAATTTAGT GGTGAATGCAGTTGGCGCGATCGCAACTGGGATCGTTTTGATCATCAACGGCACAACGAAATTCAAAGAAGGTGCATGGT TGGTGGTTATTTGTATTCCAATTCTCGTTTTGATTTTTACTACGATCAATCGTCATTACAAAGGCGTAGCCAAACAACTT TCATTGGAAGGGTTTAGCAAACCCGTGCCATTAGAAAATAATGTGATTGTGCTCGTATCATCATTGCATCGTGGCACGGT TAAAGCGCTTGAATATGCCAAATCAATTGCTCCAGGTAAAGTTCGCGCTTTGTATATTGAATTTGAGCATGAACACGAAA AAACTGAACGTCTACAAGAACGCTGGCAACAGTGGGAGCCAGATGTGCCCTTGGATATTGAAATATCTAAATATCGTTCA TTGTTACGCCCAGTTTTACGCTATGTTGATCGGATTGAAGCTGAGCGCAATGATGATATTCTAACCATTATCTTGCCTGA ATTTATTCCGGCGCGAATTTGGGAATATGCCTTACATAACCAAACCGCCTTCTTCTTGAAAGGTGCGCTGCTATTCCGAC GCAATAAAATCGTGATTAGCGTGCCATATCATCTTGAACGCTAA
Upstream 100 bases:
>100_bases AGCTTAAGGGTAATTTATTGCGACCTTAAATACAGAACATTTGTTCAATTAAATATGTGTAATTAACCCTCGTTTTGAGG AAACGCCAAGGAGTTTGTCC
Downstream 100 bases:
>100_bases AACTTAGCAACTCTTAATCAAAAAACGCCTGAACTGCCTGTGCAGTCGGGCGTTTTTTCTTGACAGGCAGTGATGGGCAA CGTATGATTACCGCCGTCTA
Product: amino acid permease-associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MLTQLKGVLVGNPLETAAQSHERLDKKTALAVFSSDALSSVAYATEEMLVHLVPAGIIAFSSSLWLGIGIAVLLMIVTIS YRQTITAYPSGGGSYIVASDNLGTLPGLIAGGALLIDYILTVAVSISSGVSQLISLVEPLRDYRIEICLIGILILTLANL RGIRESGAIFSLPTYFFITVIMLTLGYGFYKQFTGDIQPLVLSDNLMGPHEQSFSPFGTEAMTAFLLMGAFASGCSALTG VEAISNGVPAFRKPEPHNARVTMVWMAGLLLVMFAGITWFAHKYGARPQFNETVISQIGRGIWGRTTGSETGFPKVMHGM LQISTAAILLVAANTSYADFPRLMSLLARDGFLPRQFSSLGDRLVFSNGILFLAVAAALLVIGFDGSVTNLIPLYAVGVF LSFTLSQSGMVLRWLRLKTKGWQLNLVVNAVGAIATGIVLIINGTTKFKEGAWLVVICIPILVLIFTTINRHYKGVAKQL SLEGFSKPVPLENNVIVLVSSLHRGTVKALEYAKSIAPGKVRALYIEFEHEHEKTERLQERWQQWEPDVPLDIEISKYRS LLRPVLRYVDRIEAERNDDILTIILPEFIPARIWEYALHNQTAFFLKGALLFRRNKIVISVPYHLER
Sequences:
>Translated_627_residues MLTQLKGVLVGNPLETAAQSHERLDKKTALAVFSSDALSSVAYATEEMLVHLVPAGIIAFSSSLWLGIGIAVLLMIVTIS YRQTITAYPSGGGSYIVASDNLGTLPGLIAGGALLIDYILTVAVSISSGVSQLISLVEPLRDYRIEICLIGILILTLANL RGIRESGAIFSLPTYFFITVIMLTLGYGFYKQFTGDIQPLVLSDNLMGPHEQSFSPFGTEAMTAFLLMGAFASGCSALTG VEAISNGVPAFRKPEPHNARVTMVWMAGLLLVMFAGITWFAHKYGARPQFNETVISQIGRGIWGRTTGSETGFPKVMHGM LQISTAAILLVAANTSYADFPRLMSLLARDGFLPRQFSSLGDRLVFSNGILFLAVAAALLVIGFDGSVTNLIPLYAVGVF LSFTLSQSGMVLRWLRLKTKGWQLNLVVNAVGAIATGIVLIINGTTKFKEGAWLVVICIPILVLIFTTINRHYKGVAKQL SLEGFSKPVPLENNVIVLVSSLHRGTVKALEYAKSIAPGKVRALYIEFEHEHEKTERLQERWQQWEPDVPLDIEISKYRS LLRPVLRYVDRIEAERNDDILTIILPEFIPARIWEYALHNQTAFFLKGALLFRRNKIVISVPYHLER >Mature_627_residues MLTQLKGVLVGNPLETAAQSHERLDKKTALAVFSSDALSSVAYATEEMLVHLVPAGIIAFSSSLWLGIGIAVLLMIVTIS YRQTITAYPSGGGSYIVASDNLGTLPGLIAGGALLIDYILTVAVSISSGVSQLISLVEPLRDYRIEICLIGILILTLANL RGIRESGAIFSLPTYFFITVIMLTLGYGFYKQFTGDIQPLVLSDNLMGPHEQSFSPFGTEAMTAFLLMGAFASGCSALTG VEAISNGVPAFRKPEPHNARVTMVWMAGLLLVMFAGITWFAHKYGARPQFNETVISQIGRGIWGRTTGSETGFPKVMHGM LQISTAAILLVAANTSYADFPRLMSLLARDGFLPRQFSSLGDRLVFSNGILFLAVAAALLVIGFDGSVTNLIPLYAVGVF LSFTLSQSGMVLRWLRLKTKGWQLNLVVNAVGAIATGIVLIINGTTKFKEGAWLVVICIPILVLIFTTINRHYKGVAKQL SLEGFSKPVPLENNVIVLVSSLHRGTVKALEYAKSIAPGKVRALYIEFEHEHEKTERLQERWQQWEPDVPLDIEISKYRS LLRPVLRYVDRIEAERNDDILTIILPEFIPARIWEYALHNQTAFFLKGALLFRRNKIVISVPYHLER
Specific function: Unknown
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002293 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68822; Mature: 68822
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTQLKGVLVGNPLETAAQSHERLDKKTALAVFSSDALSSVAYATEEMLVHLVPAGIIAF CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH SSSLWLGIGIAVLLMIVTISYRQTITAYPSGGGSYIVASDNLGTLPGLIAGGALLIDYIL HCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH TVAVSISSGVSQLISLVEPLRDYRIEICLIGILILTLANLRGIRESGAIFSLPTYFFITV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHH IMLTLGYGFYKQFTGDIQPLVLSDNLMGPHEQSFSPFGTEAMTAFLLMGAFASGCSALTG HHHHHCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VEAISNGVPAFRKPEPHNARVTMVWMAGLLLVMFAGITWFAHKYGARPQFNETVISQIGR HHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC GIWGRTTGSETGFPKVMHGMLQISTAAILLVAANTSYADFPRLMSLLARDGFLPRQFSSL CCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHH GDRLVFSNGILFLAVAAALLVIGFDGSVTNLIPLYAVGVFLSFTLSQSGMVLRWLRLKTK CCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC GWQLNLVVNAVGAIATGIVLIINGTTKFKEGAWLVVICIPILVLIFTTINRHYKGVAKQL CEEEEEHHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH SLEGFSKPVPLENNVIVLVSSLHRGTVKALEYAKSIAPGKVRALYIEFEHEHEKTERLQE HHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH RWQQWEPDVPLDIEISKYRSLLRPVLRYVDRIEAERNDDILTIILPEFIPARIWEYALHN HHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCC QTAFFLKGALLFRRNKIVISVPYHLER CHHHHHHHHHHEECCEEEEECCCCCCC >Mature Secondary Structure MLTQLKGVLVGNPLETAAQSHERLDKKTALAVFSSDALSSVAYATEEMLVHLVPAGIIAF CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH SSSLWLGIGIAVLLMIVTISYRQTITAYPSGGGSYIVASDNLGTLPGLIAGGALLIDYIL HCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH TVAVSISSGVSQLISLVEPLRDYRIEICLIGILILTLANLRGIRESGAIFSLPTYFFITV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHH IMLTLGYGFYKQFTGDIQPLVLSDNLMGPHEQSFSPFGTEAMTAFLLMGAFASGCSALTG HHHHHCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VEAISNGVPAFRKPEPHNARVTMVWMAGLLLVMFAGITWFAHKYGARPQFNETVISQIGR HHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC GIWGRTTGSETGFPKVMHGMLQISTAAILLVAANTSYADFPRLMSLLARDGFLPRQFSSL CCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHH GDRLVFSNGILFLAVAAALLVIGFDGSVTNLIPLYAVGVFLSFTLSQSGMVLRWLRLKTK CCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC GWQLNLVVNAVGAIATGIVLIINGTTKFKEGAWLVVICIPILVLIFTTINRHYKGVAKQL CEEEEEHHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH SLEGFSKPVPLENNVIVLVSSLHRGTVKALEYAKSIAPGKVRALYIEFEHEHEKTERLQE HHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH RWQQWEPDVPLDIEISKYRSLLRPVLRYVDRIEAERNDDILTIILPEFIPARIWEYALHN HHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCC QTAFFLKGALLFRRNKIVISVPYHLER CHHHHHHHHHHEECCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]