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The map label for this gene is ydhD [H]

Identifier: 159897696

GI number: 159897696

Start: 1339259

End: 1340515

Strand: Reverse

Name: ydhD [H]

Synonym: Haur_1167

Alternate gene names: 159897696

Gene position: 1340515-1339259 (Counterclockwise)

Preceding gene: 159897697

Following gene: 159897695

Centisome position: 21.12

GC content: 50.36

Gene sequence:

>1257_bases
ATGTTTCGTCATCTTTTTCGCGGGGTTCTGGCAATTGGGATTTTGGTCTGGATCGTGTTTCTCTGGCAGTTTATTGATTT
ACGGATCAAGCACAGTCGCGCCGCCGATGCCGCCGCCCAAGCTCTCTTGCCCCGAGCAACCTCAACCGCCTTGCCCGTTC
CTACCTTTGTTGCGCCAACCTTGCAGCCGCTGCCCAACACGGTTGCCGATGGTCAAGGCGGCTCAGAGCTACCTGCTAGC
GCCAATGATGTGCGCGGGGTACACCCCAAAACAGGCCGCTACGTCGCTGCTTGGCTGCCAACCTCGTTTGATGCCGAGGC
GGCCCGTGCAACCTTTGAAGCCAACAAAGATATTCTCGATGAGGTCAGCCCGTTTTGGTATGGCGTGCGACCTGATGGCA
CGTTAATCGCCGACGTTGGCTCACGCGATGCCGAATTGGTGCAAATTGCCAAAGAAAATAATGTGCTGATTATTCCAACT
GTGCATAATATTGAAGATTTGGAAGCAGCTTCGGTGGTGTTGGCAACGCCCGAAAGCCGCACAAACCATATTAATATTAT
TATGGATGAGGTTCGGACCTACGGCTACGATGGCATCGACATCGATTATGAATCGCTTGCGCTTGATTATGAAGATGAAT
TTACCGCCTTTATGACCGAATTGGGTGCTGCGTTGCATGCTGAAGATAAATTATTAACCGTTGCAGTGCATGCCCACACT
GGTCGCCCCGATTACCAAAATTATGCCGATTTGGGCAAAGTGGTTGATCGGCTGCGGATTATGACCTACGATTATAGCTG
GCGTGGCTCGGAGCCAGGCCCAATTGCTCCGATGTTTTGGGTCAAAGCGGTGGCCGAATATGCCAAAACCCAAGTTGACC
CCAGCAAAATTCAAATTGGCATTTCGTTTTATGCCTACGATTGGCCAGGTAATGGCGGCTTTGGGGTTGCTCGCACCTAT
ACTGAAGTTGAAGAAATTAAAGCCACCTATCAGCCCCAAATTCGCTTAGTTGAGGAAGATGGCGGCCAGCAAATTCAGGA
ATCAACTTTTAACTATGCTGGACGCACGGTTTGGTTCTCCAATTATCGTTCGCTAACCGCCAAAATGGAGATGGTGCGCG
AAAACGATTTAGCAGGCATTGCAATTTGGCGCTTGGGCAGCGAAGATCCCCAAAACTGGACCTATATTCGCGAATCGTTG
AAACAAGATCCCTTGATCGTCCAACGCTCAATCAATCGCTATCTTCCTGGCCATTAA

Upstream 100 bases:

>100_bases
ACTTCATCCTTTAATCTAGCCTTTCTTGGAAAGCCGTGTTTAATCGGTTATACTGCGAGTGTTCTTTTTCTTGGATTGTT
TGTTGATCGAGTGAATTGTT

Downstream 100 bases:

>100_bases
TCAGAAAGGCAAAAGTCAAAAGGCAAAGGGCAAAATCGATGCTCGCTATAGCTTGTTTATTTTGACTTCTGCCTTTTGCC
CTTTGAGTTATACATATGGA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MFRHLFRGVLAIGILVWIVFLWQFIDLRIKHSRAADAAAQALLPRATSTALPVPTFVAPTLQPLPNTVADGQGGSELPAS
ANDVRGVHPKTGRYVAAWLPTSFDAEAARATFEANKDILDEVSPFWYGVRPDGTLIADVGSRDAELVQIAKENNVLIIPT
VHNIEDLEAASVVLATPESRTNHINIIMDEVRTYGYDGIDIDYESLALDYEDEFTAFMTELGAALHAEDKLLTVAVHAHT
GRPDYQNYADLGKVVDRLRIMTYDYSWRGSEPGPIAPMFWVKAVAEYAKTQVDPSKIQIGISFYAYDWPGNGGFGVARTY
TEVEEIKATYQPQIRLVEEDGGQQIQESTFNYAGRTVWFSNYRSLTAKMEMVRENDLAGIAIWRLGSEDPQNWTYIRESL
KQDPLIVQRSINRYLPGH

Sequences:

>Translated_418_residues
MFRHLFRGVLAIGILVWIVFLWQFIDLRIKHSRAADAAAQALLPRATSTALPVPTFVAPTLQPLPNTVADGQGGSELPAS
ANDVRGVHPKTGRYVAAWLPTSFDAEAARATFEANKDILDEVSPFWYGVRPDGTLIADVGSRDAELVQIAKENNVLIIPT
VHNIEDLEAASVVLATPESRTNHINIIMDEVRTYGYDGIDIDYESLALDYEDEFTAFMTELGAALHAEDKLLTVAVHAHT
GRPDYQNYADLGKVVDRLRIMTYDYSWRGSEPGPIAPMFWVKAVAEYAKTQVDPSKIQIGISFYAYDWPGNGGFGVARTY
TEVEEIKATYQPQIRLVEEDGGQQIQESTFNYAGRTVWFSNYRSLTAKMEMVRENDLAGIAIWRLGSEDPQNWTYIRESL
KQDPLIVQRSINRYLPGH
>Mature_418_residues
MFRHLFRGVLAIGILVWIVFLWQFIDLRIKHSRAADAAAQALLPRATSTALPVPTFVAPTLQPLPNTVADGQGGSELPAS
ANDVRGVHPKTGRYVAAWLPTSFDAEAARATFEANKDILDEVSPFWYGVRPDGTLIADVGSRDAELVQIAKENNVLIIPT
VHNIEDLEAASVVLATPESRTNHINIIMDEVRTYGYDGIDIDYESLALDYEDEFTAFMTELGAALHAEDKLLTVAVHAHT
GRPDYQNYADLGKVVDRLRIMTYDYSWRGSEPGPIAPMFWVKAVAEYAKTQVDPSKIQIGISFYAYDWPGNGGFGVARTY
TEVEEIKATYQPQIRLVEEDGGQQIQESTFNYAGRTVWFSNYRSLTAKMEMVRENDLAGIAIWRLGSEDPQNWTYIRESL
KQDPLIVQRSINRYLPGH

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 46743; Mature: 46743

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRHLFRGVLAIGILVWIVFLWQFIDLRIKHSRAADAAAQALLPRATSTALPVPTFVAPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCCCCCCCHHHCCC
LQPLPNTVADGQGGSELPASANDVRGVHPKTGRYVAAWLPTSFDAEAARATFEANKDILD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCHHHHH
EVSPFWYGVRPDGTLIADVGSRDAELVQIAKENNVLIIPTVHNIEDLEAASVVLATPESR
CCCCCEEEECCCCCEEEECCCCCCHHHHEECCCCEEEEEECCCCCHHCCCEEEEECCCCC
TNHINIIMDEVRTYGYDGIDIDYESLALDYEDEFTAFMTELGAALHAEDKLLTVAVHAHT
CCEEEEEEEHHHHCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
GRPDYQNYADLGKVVDRLRIMTYDYSWRGSEPGPIAPMFWVKAVAEYAKTQVDPSKIQIG
CCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEE
ISFYAYDWPGNGGFGVARTYTEVEEIKATYQPQIRLVEEDGGQQIQESTFNYAGRTVWFS
EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEH
NYRSLTAKMEMVRENDLAGIAIWRLGSEDPQNWTYIRESLKQDPLIVQRSINRYLPGH
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MFRHLFRGVLAIGILVWIVFLWQFIDLRIKHSRAADAAAQALLPRATSTALPVPTFVAPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCCCCCCCHHHCCC
LQPLPNTVADGQGGSELPASANDVRGVHPKTGRYVAAWLPTSFDAEAARATFEANKDILD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCHHHHH
EVSPFWYGVRPDGTLIADVGSRDAELVQIAKENNVLIIPTVHNIEDLEAASVVLATPESR
CCCCCEEEECCCCCEEEECCCCCCHHHHEECCCCEEEEEECCCCCHHCCCEEEEECCCCC
TNHINIIMDEVRTYGYDGIDIDYESLALDYEDEFTAFMTELGAALHAEDKLLTVAVHAHT
CCEEEEEEEHHHHCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
GRPDYQNYADLGKVVDRLRIMTYDYSWRGSEPGPIAPMFWVKAVAEYAKTQVDPSKIQIG
CCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEE
ISFYAYDWPGNGGFGVARTYTEVEEIKATYQPQIRLVEEDGGQQIQESTFNYAGRTVWFS
EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEEH
NYRSLTAKMEMVRENDLAGIAIWRLGSEDPQNWTYIRESLKQDPLIVQRSINRYLPGH
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]