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The map label for this gene is yciR [C]

Identifier: 159897637

GI number: 159897637

Start: 1268834

End: 1270624

Strand: Direct

Name: yciR [C]

Synonym: Haur_1108

Alternate gene names: 159897637

Gene position: 1268834-1270624 (Clockwise)

Preceding gene: 159897636

Following gene: 159897641

Centisome position: 19.99

GC content: 51.37

Gene sequence:

>1791_bases
ATGAGTGTTCAAATGCCCAACGTCCGATTGCCCGATTCGGCTGCCCAAGCGGCCATGTTGCCAACCGAATGGTTATTAAT
CGGCTTAGTTTGCGGGCTGGGAATCTGGTTGTGCTGGCGTTGGCAGCGCCGCCGCACCGCTCAGCGCATTAGCACCCAAT
TAGGCTTGTGGCACTGGCCGCACAGTCAACAAACGGTGATTATCGATCAGCATGCGACGATTATTGCAATCAGCCCGCTG
CTGAATCAACAGCTTGGCTATCCAGCCCTCAGCCTCAACGGTCAATCATTCAAGCACCTCCTGCATCCTGATTCATCCAA
CTATTTTGAACAACTGCTGCATACCCAAACTACCCAAATTCACTGGCAAATGCTGCGCTGTCGCCATGCTGATGGCTCGT
GGCGTGGGCTGGAGTTTTGTCGGCATCAAGTTGGCCGCTATTGGCTACTCAATTGCCGTGAAACTGAGCCTGTTGTAACT
GCGCAACGAACACCGCCTGCCTGCGATTGGCTGACGGGCTTGCCCAATCGCCAGAGCTTGGTTATTCAACTACAACGCTT
GATCGCCCAGCGCCAACTCGATCAACAACACTTTGCCGTCTTGTTTGTTGAAGTTGATCGATTTAGTGCGATTAACGATG
CCTTGGGCTACGATGTTGGCGATCAAGTGCTGCAAACGATCGCCCAACGCCTCCAATCAACGCTTGGCCCCAATGATTTA
GCTGCCCGTTTAGGTGGCGATGAATTTGTGGTTGTGCTTGGCCACGTGCAACATGCGCAACAAGCGCTTGAGCATGCTCA
ACGAATTCAAGAGCAATTTAGCCAGCCAATTGTGCTACGCGATAAGCCAATTTATACCACCCTCGGCATTGGTGTGACGC
TCGGCGATGGCCAATCCCAGGCTGAAACTTTGCTGCGTGAGGCTGATACGGCCATGTATCAAGCCAAAACCAATGGCATT
AGCCAAATCTTTTTGTTTGATCGTGCGTTGCATGCGGCGCTGGCTGAGCGTTGGCAACTGGAAATTGATTTGCGCGGAGC
TTTAGAGCGCCATGAATTAATTTTGCATTATCAGCCAATTACGGCACTGCCTACCGGCCAGATGGTTGGGGTTGAGGCTT
TGTTGCGCTGGCATCACCCGCAGCGCGGCATGATTCTGCCCAACGAGTTTATTCATTTGGCCGAGGAAAGTGGCTTAATT
GTGCCAATTGGTTTTTGGGCTTTAGAAACTGCCTGCCTACAATTTTTGGCTTGGCAAGCTGATTATTCGCGGCCCCGCTT
ACAAGTGCTTTCGGTCAATCTCTCGGCGCGTCAATTGGCCAGCCCAGCCTTAGTTCAAACCTTGGGCGAGATTATTCAGC
GCACTGGAATCAATCCGGCTCAGTTGGAGCTAGAAATTACCGAAAGTATGGTGATTCATGGCTTTGAATTGGCGCGGGCA
CAGTTGGGCGCAATCAAAAATTTGGGGGTAAAGCTGGCGATTGATGATTTTGGCACAGGGTATTCATCATTAAGCTATTT
GCACCACTTCCCCTTGGATACGCTCAAAGTTGATCGCTCATTCGTCAATGCCATGAGCGATGGCAGCCGCAACGTCGAAA
TTGTGCGGGCAATTATCATGCTCTCGCAGCAATTGGCCATGAATGTAATTGCTGAGGGCATCGAAACAATTGAAGAAGCG
GCGACCTTGCGCGATTTGGGCTGTGATTATGGTCAGGGCTATCATTTTAGCCGCCCCATGACAGCGCCCGATATTACCTC
GTGGCTGCATAGCCAACCGTTGAGTCTTTGA

Upstream 100 bases:

>100_bases
ACTACTCGACAAAGCTACGAACTCAGGTAGTATGTAGCTCTGAGTTCCTAATGCCAAAATCTGCCCTGACCGCAGGTTTC
GGCTGATTCACGTAGGTGTC

Downstream 100 bases:

>100_bases
AACCCGCATGAATTTAGCTCGTAATGGAGAGGATTATTGTTGTAGTTGAAATTAAGTGGATACTTGAGGGTATTTAAAGA
TGATCACCAAAGAGGGACAA

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MSVQMPNVRLPDSAAQAAMLPTEWLLIGLVCGLGIWLCWRWQRRRTAQRISTQLGLWHWPHSQQTVIIDQHATIIAISPL
LNQQLGYPALSLNGQSFKHLLHPDSSNYFEQLLHTQTTQIHWQMLRCRHADGSWRGLEFCRHQVGRYWLLNCRETEPVVT
AQRTPPACDWLTGLPNRQSLVIQLQRLIAQRQLDQQHFAVLFVEVDRFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDL
AARLGGDEFVVVLGHVQHAQQALEHAQRIQEQFSQPIVLRDKPIYTTLGIGVTLGDGQSQAETLLREADTAMYQAKTNGI
SQIFLFDRALHAALAERWQLEIDLRGALERHELILHYQPITALPTGQMVGVEALLRWHHPQRGMILPNEFIHLAEESGLI
VPIGFWALETACLQFLAWQADYSRPRLQVLSVNLSARQLASPALVQTLGEIIQRTGINPAQLELEITESMVIHGFELARA
QLGAIKNLGVKLAIDDFGTGYSSLSYLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIMLSQQLAMNVIAEGIETIEEA
ATLRDLGCDYGQGYHFSRPMTAPDITSWLHSQPLSL

Sequences:

>Translated_596_residues
MSVQMPNVRLPDSAAQAAMLPTEWLLIGLVCGLGIWLCWRWQRRRTAQRISTQLGLWHWPHSQQTVIIDQHATIIAISPL
LNQQLGYPALSLNGQSFKHLLHPDSSNYFEQLLHTQTTQIHWQMLRCRHADGSWRGLEFCRHQVGRYWLLNCRETEPVVT
AQRTPPACDWLTGLPNRQSLVIQLQRLIAQRQLDQQHFAVLFVEVDRFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDL
AARLGGDEFVVVLGHVQHAQQALEHAQRIQEQFSQPIVLRDKPIYTTLGIGVTLGDGQSQAETLLREADTAMYQAKTNGI
SQIFLFDRALHAALAERWQLEIDLRGALERHELILHYQPITALPTGQMVGVEALLRWHHPQRGMILPNEFIHLAEESGLI
VPIGFWALETACLQFLAWQADYSRPRLQVLSVNLSARQLASPALVQTLGEIIQRTGINPAQLELEITESMVIHGFELARA
QLGAIKNLGVKLAIDDFGTGYSSLSYLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIMLSQQLAMNVIAEGIETIEEA
ATLRDLGCDYGQGYHFSRPMTAPDITSWLHSQPLSL
>Mature_595_residues
SVQMPNVRLPDSAAQAAMLPTEWLLIGLVCGLGIWLCWRWQRRRTAQRISTQLGLWHWPHSQQTVIIDQHATIIAISPLL
NQQLGYPALSLNGQSFKHLLHPDSSNYFEQLLHTQTTQIHWQMLRCRHADGSWRGLEFCRHQVGRYWLLNCRETEPVVTA
QRTPPACDWLTGLPNRQSLVIQLQRLIAQRQLDQQHFAVLFVEVDRFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDLA
ARLGGDEFVVVLGHVQHAQQALEHAQRIQEQFSQPIVLRDKPIYTTLGIGVTLGDGQSQAETLLREADTAMYQAKTNGIS
QIFLFDRALHAALAERWQLEIDLRGALERHELILHYQPITALPTGQMVGVEALLRWHHPQRGMILPNEFIHLAEESGLIV
PIGFWALETACLQFLAWQADYSRPRLQVLSVNLSARQLASPALVQTLGEIIQRTGINPAQLELEITESMVIHGFELARAQ
LGAIKNLGVKLAIDDFGTGYSSLSYLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIMLSQQLAMNVIAEGIETIEEAA
TLRDLGCDYGQGYHFSRPMTAPDITSWLHSQPLSL

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=37.5, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=36, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI226510982, Length=413, Percent_Identity=33.4140435835351, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=34.7826086956522, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=35.2, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=273, Percent_Identity=34.0659340659341, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=34.3873517786561, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787055, Length=402, Percent_Identity=27.1144278606965, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=34.4, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081980, Length=270, Percent_Identity=35.1851851851852, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1788849, Length=250, Percent_Identity=32, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=30.2040816326531, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=549, Percent_Identity=22.9508196721311, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=31.1764705882353, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=183, Percent_Identity=32.7868852459016, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=35.1515151515151, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=31.5151515151515, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=149, Percent_Identity=37.5838926174497, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1786584, Length=152, Percent_Identity=29.6052631578947, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081881, Length=156, Percent_Identity=31.4102564102564, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=29.559748427673, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=32.0261437908497, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67086; Mature: 66955

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQMPNVRLPDSAAQAAMLPTEWLLIGLVCGLGIWLCWRWQRRRTAQRISTQLGLWHWP
CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
HSQQTVIIDQHATIIAISPLLNQQLGYPALSLNGQSFKHLLHPDSSNYFEQLLHTQTTQI
CCCCEEEEECCCEEEEECHHHHHHCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHH
HWQMLRCRHADGSWRGLEFCRHQVGRYWLLNCRETEPVVTAQRTPPACDWLTGLPNRQSL
HHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCCHHHHCCCCCCHHH
VIQLQRLIAQRQLDQQHFAVLFVEVDRFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDL
HHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
AARLGGDEFVVVLGHVQHAQQALEHAQRIQEQFSQPIVLRDKPIYTTLGIGVTLGDGQSQ
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCHH
AETLLREADTAMYQAKTNGISQIFLFDRALHAALAERWQLEIDLRGALERHELILHYQPI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCEEEEECCC
TALPTGQMVGVEALLRWHHPQRGMILPNEFIHLAEESGLIVPIGFWALETACLQFLAWQA
CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHC
DYSRPRLQVLSVNLSARQLASPALVQTLGEIIQRTGINPAQLELEITESMVIHGFELARA
CCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHH
QLGAIKNLGVKLAIDDFGTGYSSLSYLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIM
HHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LSQQLAMNVIAEGIETIEEAATLRDLGCDYGQGYHFSRPMTAPDITSWLHSQPLSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVQMPNVRLPDSAAQAAMLPTEWLLIGLVCGLGIWLCWRWQRRRTAQRISTQLGLWHWP
CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
HSQQTVIIDQHATIIAISPLLNQQLGYPALSLNGQSFKHLLHPDSSNYFEQLLHTQTTQI
CCCCEEEEECCCEEEEECHHHHHHCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHH
HWQMLRCRHADGSWRGLEFCRHQVGRYWLLNCRETEPVVTAQRTPPACDWLTGLPNRQSL
HHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCCHHHHCCCCCCHHH
VIQLQRLIAQRQLDQQHFAVLFVEVDRFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDL
HHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
AARLGGDEFVVVLGHVQHAQQALEHAQRIQEQFSQPIVLRDKPIYTTLGIGVTLGDGQSQ
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCHH
AETLLREADTAMYQAKTNGISQIFLFDRALHAALAERWQLEIDLRGALERHELILHYQPI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCEEEEECCC
TALPTGQMVGVEALLRWHHPQRGMILPNEFIHLAEESGLIVPIGFWALETACLQFLAWQA
CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHC
DYSRPRLQVLSVNLSARQLASPALVQTLGEIIQRTGINPAQLELEITESMVIHGFELARA
CCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHH
QLGAIKNLGVKLAIDDFGTGYSSLSYLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIM
HHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LSQQLAMNVIAEGIETIEEAATLRDLGCDYGQGYHFSRPMTAPDITSWLHSQPLSL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]