Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159897620

Identifier: 159897620

GI number: 159897620

Start: 1247843

End: 1248640

Strand: Direct

Name: 159897620

Synonym: Haur_1091

Alternate gene names: NA

Gene position: 1247843-1248640 (Clockwise)

Preceding gene: 159897619

Following gene: 159897622

Centisome position: 19.66

GC content: 56.39

Gene sequence:

>798_bases
ATGAGTAGCGAAGCATGGCGTTTGGGCGTGGCGGGCCAGTGGCAGCGTTTGTTGCTCTACCCTGGTGGCTTGAGTGCGCT
GGTGATGGTTAGTTTAGGTTGGTTGGTTTGGCGTTGGCTGAGCCCGCGCCAAAATCCGGTTGGAACCGAGCATCCGTTTG
ATTGGTTGCTCGTGCCATTGCCATTGTTGGCGCTGAGCCTCTGGCCCTTTGCTGAATCGAGCGAACTGCGGGCGACGCTT
GATCTGTTGAGTTATTGGTTGTTGCTCGATGCGCCGTTGCTCTGGGCGATTGGCCAAGATTGGCGTAATGGAGCCTTGGC
TGGCTTACGGGCGGCGCGTTGGTTGGTTGGTTTGATTACTGGCTGGCCGCTGCTGGGCTTGGTTGGCTGGATCATTGCCA
GTTTGCATGGTGGGTTATTGCCCAATGATCTGTTGATTTTGGGCGAGGGTTGGCTTGGTTGGCTGGCATTAGCACTCTGG
TTGGCTGGCTTGTTGCCTTATCTCCAACTTGGTGCTTGGGAAACTGCACCAACCCAAGGGGCGTTGGCTTGGGCCTTGGG
GGCACGCCGTTTGGGCCATTTGGCACTGCTGGCTTGGCTGTTGCAAGCCCAATTTAAGTTGGCTTGGCTTGGCTCAATTT
GGGGGTTTGGCGCTTTGTTATTGGGTTTGTGGTTGCTGCTGCTCGGCTTGACCTCTTGGTTACGGCGCTATTCGCAGGCC
CAAGTTGGGGCATGGCTGTGGAGCGGAGCACTGGTTGGATTGCTAGGCTTTGGCTTGAGCAGTTGGCTCAATCGCTAA

Upstream 100 bases:

>100_bases
TGGCGCAGCCATATGACCAATGCCGACCGTGAGCCGTTGCGTGAGCAAACCGTTTGGCAATTGGTGCGGCGTGGCTTGCC
ATGGGGGAGCAAATCACGCG

Downstream 100 bases:

>100_bases
ACCCCAATATAAACTAGTTTGTTTGATGTGATAGCGTTGAATGCCTGCTGCTTGCAGCATTGATTGAATTTCGCTGCTGC
GCCAGGCGCGTAGCACTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSSEAWRLGVAGQWQRLLLYPGGLSALVMVSLGWLVWRWLSPRQNPVGTEHPFDWLLVPLPLLALSLWPFAESSELRATL
DLLSYWLLLDAPLLWAIGQDWRNGALAGLRAARWLVGLITGWPLLGLVGWIIASLHGGLLPNDLLILGEGWLGWLALALW
LAGLLPYLQLGAWETAPTQGALAWALGARRLGHLALLAWLLQAQFKLAWLGSIWGFGALLLGLWLLLLGLTSWLRRYSQA
QVGAWLWSGALVGLLGFGLSSWLNR

Sequences:

>Translated_265_residues
MSSEAWRLGVAGQWQRLLLYPGGLSALVMVSLGWLVWRWLSPRQNPVGTEHPFDWLLVPLPLLALSLWPFAESSELRATL
DLLSYWLLLDAPLLWAIGQDWRNGALAGLRAARWLVGLITGWPLLGLVGWIIASLHGGLLPNDLLILGEGWLGWLALALW
LAGLLPYLQLGAWETAPTQGALAWALGARRLGHLALLAWLLQAQFKLAWLGSIWGFGALLLGLWLLLLGLTSWLRRYSQA
QVGAWLWSGALVGLLGFGLSSWLNR
>Mature_264_residues
SSEAWRLGVAGQWQRLLLYPGGLSALVMVSLGWLVWRWLSPRQNPVGTEHPFDWLLVPLPLLALSLWPFAESSELRATLD
LLSYWLLLDAPLLWAIGQDWRNGALAGLRAARWLVGLITGWPLLGLVGWIIASLHGGLLPNDLLILGEGWLGWLALALWL
AGLLPYLQLGAWETAPTQGALAWALGARRLGHLALLAWLLQAQFKLAWLGSIWGFGALLLGLWLLLLGLTSWLRRYSQAQ
VGAWLWSGALVGLLGFGLSSWLNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29280; Mature: 29149

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEAWRLGVAGQWQRLLLYPGGLSALVMVSLGWLVWRWLSPRQNPVGTEHPFDWLLVPL
CCCCCEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
PLLALSLWPFAESSELRATLDLLSYWLLLDAPLLWAIGQDWRNGALAGLRAARWLVGLIT
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHH
GWPLLGLVGWIIASLHGGLLPNDLLILGEGWLGWLALALWLAGLLPYLQLGAWETAPTQG
CCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ALAWALGARRLGHLALLAWLLQAQFKLAWLGSIWGFGALLLGLWLLLLGLTSWLRRYSQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVGAWLWSGALVGLLGFGLSSWLNR
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSEAWRLGVAGQWQRLLLYPGGLSALVMVSLGWLVWRWLSPRQNPVGTEHPFDWLLVPL
CCCCEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
PLLALSLWPFAESSELRATLDLLSYWLLLDAPLLWAIGQDWRNGALAGLRAARWLVGLIT
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHH
GWPLLGLVGWIIASLHGGLLPNDLLILGEGWLGWLALALWLAGLLPYLQLGAWETAPTQG
CCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ALAWALGARRLGHLALLAWLLQAQFKLAWLGSIWGFGALLLGLWLLLLGLTSWLRRYSQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVGAWLWSGALVGLLGFGLSSWLNR
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA