Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159897569
Identifier: 159897569
GI number: 159897569
Start: 1186901
End: 1187545
Strand: Reverse
Name: 159897569
Synonym: Haur_1040
Alternate gene names: NA
Gene position: 1187545-1186901 (Counterclockwise)
Preceding gene: 159897570
Following gene: 159897568
Centisome position: 18.71
GC content: 51.78
Gene sequence:
>645_bases ATGCGAGATTACATTTTACGCCTGATCGAACAATTTGGCCTTATTTGGCGCAAGATTGTGCGTTTGCACGAGGCTGGCTC AATCGAAGAGGCTCAAGCCACAATCAACACGGCCTATCGCGATTTATTCGATACCCATAGCCATTTTGTCGATTTATTGC CCGATGAAGATTTGCTCAAGTTAGTTCAATTCGGGGGCACGATTGATCTTGATCGTTGTGCGGTGCTGGCAGCTTTGCAT GTTGCTGAAGGCCAGTGTTTCCAAGCACAAGGCATGATTGACGAGGCCTATCGGCGTTTTGATCGAGCCTTGATGCTTTA TGGAGCCTTGGTGCGGTCAAGTCAGCAAATTCCGCCTGAAGTGCGTGAGGCGGCTAAAGCTGGGCTACACGAATTGAGCA ATTACGAGCTAGAGCCTGCAACTCTCGACGATGCTTGGCGCGTCTATGCAGCAGTCGGCGATTATCCCAATGCCGAGGAT CATCTCTGGCAGTGGCTTGAGGCGACTGAATTTGCCGAAGCCGCATGCAGTGATGCTCAGGCGTGGTATCATCAATTGCT CACTCGTAGCGATGCCAGCCTTGAGCAATTGGGCTTGCCACGGCAGGAGATCGAGCAAAGCCTTGGCCAACTCGCCGCAC ATTAG
Upstream 100 bases:
>100_bases AGTTGCCAACCAACGATCCAAATGAATTAATCAAACAATTAGGCTAAATTGTTAGCGCAGTTTATGGGCAACCACAGGCT GCGCTCTTTTTTGAGGAGCT
Downstream 100 bases:
>100_bases GATTGCATTGCGCTCCAAGGGAGGTTTATTTCGATGAAAATTGCAATTATTGGAACCGGTTGGGGTGCTCGCGTTCAGGT GCCAGCCTTTCGTTCGGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MRDYILRLIEQFGLIWRKIVRLHEAGSIEEAQATINTAYRDLFDTHSHFVDLLPDEDLLKLVQFGGTIDLDRCAVLAALH VAEGQCFQAQGMIDEAYRRFDRALMLYGALVRSSQQIPPEVREAAKAGLHELSNYELEPATLDDAWRVYAAVGDYPNAED HLWQWLEATEFAEAACSDAQAWYHQLLTRSDASLEQLGLPRQEIEQSLGQLAAH
Sequences:
>Translated_214_residues MRDYILRLIEQFGLIWRKIVRLHEAGSIEEAQATINTAYRDLFDTHSHFVDLLPDEDLLKLVQFGGTIDLDRCAVLAALH VAEGQCFQAQGMIDEAYRRFDRALMLYGALVRSSQQIPPEVREAAKAGLHELSNYELEPATLDDAWRVYAAVGDYPNAED HLWQWLEATEFAEAACSDAQAWYHQLLTRSDASLEQLGLPRQEIEQSLGQLAAH >Mature_214_residues MRDYILRLIEQFGLIWRKIVRLHEAGSIEEAQATINTAYRDLFDTHSHFVDLLPDEDLLKLVQFGGTIDLDRCAVLAALH VAEGQCFQAQGMIDEAYRRFDRALMLYGALVRSSQQIPPEVREAAKAGLHELSNYELEPATLDDAWRVYAAVGDYPNAED HLWQWLEATEFAEAACSDAQAWYHQLLTRSDASLEQLGLPRQEIEQSLGQLAAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24284; Mature: 24284
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDYILRLIEQFGLIWRKIVRLHEAGSIEEAQATINTAYRDLFDTHSHFVDLLPDEDLLK CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LVQFGGTIDLDRCAVLAALHVAEGQCFQAQGMIDEAYRRFDRALMLYGALVRSSQQIPPE HHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH VREAAKAGLHELSNYELEPATLDDAWRVYAAVGDYPNAEDHLWQWLEATEFAEAACSDAQ HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AWYHQLLTRSDASLEQLGLPRQEIEQSLGQLAAH HHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure MRDYILRLIEQFGLIWRKIVRLHEAGSIEEAQATINTAYRDLFDTHSHFVDLLPDEDLLK CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LVQFGGTIDLDRCAVLAALHVAEGQCFQAQGMIDEAYRRFDRALMLYGALVRSSQQIPPE HHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH VREAAKAGLHELSNYELEPATLDDAWRVYAAVGDYPNAEDHLWQWLEATEFAEAACSDAQ HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH AWYHQLLTRSDASLEQLGLPRQEIEQSLGQLAAH HHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA