Click here to switch to the map view.

The map label for this gene is ccpA [H]

Identifier: 159897307

GI number: 159897307

Start: 879297

End: 880229

Strand: Reverse

Name: ccpA [H]

Synonym: Haur_0778

Alternate gene names: 159897307

Gene position: 880229-879297 (Counterclockwise)

Preceding gene: 159897311

Following gene: 159897306

Centisome position: 13.87

GC content: 53.8

Gene sequence:

>933_bases
ATGGCAACGATCAAGGATGTTGCGCAATTAGCAGGGGTTTCAGTTGCCACGGTGTCGTATGTTTTGAACGACAGCATGCC
GGTCAGCGAAGCCACGCGCAACAAAGTGCTAGCCGCAGTTGCCAAACTCGGCTATCAACCCCATCGTCAAGGCCGTAATC
TGCAACGTCAACGCACCTTAACTATTGGCGTACTGTTACCCCAAGCTAATCTATTATGTGAACTCGATTTGGCCACCTGG
CTGCTCGAAGCAACCAATGCTGCAACTAGCGCAGGCTATAGTCTCTTACTACAACCTGCCGATAGCCAAGCCCGTGGCGA
TTTGGCCGATGGTTGGATTAGTTTTGGCACAGTACTCGACCCACAATTGCCCCAAATTTGGGCATTAGCCCCCCCGTTTG
AGCAACCAGCCGTCTTGTGTGACGCAGCCTTTGCTGCACAACGCGCGGTTGAAACCTTGACCCATGCGGGGATGCAACGG
ATCGGCCTGATTACGCTACCGCGCAGCATTCCAGGCTCGGCCCGTTGGTATCTGGGTTATCGACGCGCTTTACGCCGCGC
AGGCATCGCCTTTGATCCAGCGTTGGTCGTCGAGCCAGCCGACAATCGTTTTCACGATGGGGTTGCTGCTTACGAAGCAC
TTGCCGCCAGCGAAAACGACTATGATGGCTTGATCGTCTGTGGCAATCAACTGGCAACCGGGGTGGTGATGGTCGATCAT
GCCAAAGTACCACTGATCGTTAGCCATAGCAATACCCAACGCGGCATCTCGGGCTTTCGCTGGCCAACCGAACTTTGGGC
ACATACCTTGGTGCGAAAACTCCTACAACAGCTTGATGGGAGCGCCATTGCTCACCGTACATGGCTCAACCCAAGCTTGG
TGATTGGTTCATTAGGTTTCAAGGAGGATCTCGATGGCTTCAATTACGTTTGA

Upstream 100 bases:

>100_bases
TGTTGCCCAAGCGCCATACAACCCCCTTTTAATCGCAACTTGTCAAGGATAAATAAGTGCAGTATACTCTATTTAAACGT
TTAAATAGATGAGGCCAACG

Downstream 100 bases:

>100_bases
TCACGTTGATAAAATCTTTGGTGATGTGCACGTTCTCAAAGATCTCAACATCGATATTCCTGATCAAGAATTTTTGGTCT
TGGTTGGCCCTTCAGGCTGT

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Catabolite control protein [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MATIKDVAQLAGVSVATVSYVLNDSMPVSEATRNKVLAAVAKLGYQPHRQGRNLQRQRTLTIGVLLPQANLLCELDLATW
LLEATNAATSAGYSLLLQPADSQARGDLADGWISFGTVLDPQLPQIWALAPPFEQPAVLCDAAFAAQRAVETLTHAGMQR
IGLITLPRSIPGSARWYLGYRRALRRAGIAFDPALVVEPADNRFHDGVAAYEALAASENDYDGLIVCGNQLATGVVMVDH
AKVPLIVSHSNTQRGISGFRWPTELWAHTLVRKLLQQLDGSAIAHRTWLNPSLVIGSLGFKEDLDGFNYV

Sequences:

>Translated_310_residues
MATIKDVAQLAGVSVATVSYVLNDSMPVSEATRNKVLAAVAKLGYQPHRQGRNLQRQRTLTIGVLLPQANLLCELDLATW
LLEATNAATSAGYSLLLQPADSQARGDLADGWISFGTVLDPQLPQIWALAPPFEQPAVLCDAAFAAQRAVETLTHAGMQR
IGLITLPRSIPGSARWYLGYRRALRRAGIAFDPALVVEPADNRFHDGVAAYEALAASENDYDGLIVCGNQLATGVVMVDH
AKVPLIVSHSNTQRGISGFRWPTELWAHTLVRKLLQQLDGSAIAHRTWLNPSLVIGSLGFKEDLDGFNYV
>Mature_309_residues
ATIKDVAQLAGVSVATVSYVLNDSMPVSEATRNKVLAAVAKLGYQPHRQGRNLQRQRTLTIGVLLPQANLLCELDLATWL
LEATNAATSAGYSLLLQPADSQARGDLADGWISFGTVLDPQLPQIWALAPPFEQPAVLCDAAFAAQRAVETLTHAGMQRI
GLITLPRSIPGSARWYLGYRRALRRAGIAFDPALVVEPADNRFHDGVAAYEALAASENDYDGLIVCGNQLATGVVMVDHA
KVPLIVSHSNTQRGISGFRWPTELWAHTLVRKLLQQLDGSAIAHRTWLNPSLVIGSLGFKEDLDGFNYV

Specific function: Transcriptional regulator involved in both the repression of carbohydrate utilization genes such as the alpha- amylase (amyE) and the acetyl-coenzyme A synthetase (acsA); and in the positive regulation of genes involved in excretion of excess carbon such

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=234, Percent_Identity=32.9059829059829, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789202, Length=225, Percent_Identity=31.1111111111111, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790194, Length=258, Percent_Identity=29.8449612403101, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788474, Length=207, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787948, Length=98, Percent_Identity=40.8163265306122, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006377
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33557; Mature: 33426

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKDVAQLAGVSVATVSYVLNDSMPVSEATRNKVLAAVAKLGYQPHRQGRNLQRQRTL
CCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEE
TIGVLLPQANLLCELDLATWLLEATNAATSAGYSLLLQPADSQARGDLADGWISFGTVLD
EEEEEECCCCEEEEHHHHHHHHHHHCCHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
PQLPQIWALAPPFEQPAVLCDAAFAAQRAVETLTHAGMQRIGLITLPRSIPGSARWYLGY
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHH
RRALRRAGIAFDPALVVEPADNRFHDGVAAYEALAASENDYDGLIVCGNQLATGVVMVDH
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEC
AKVPLIVSHSNTQRGISGFRWPTELWAHTLVRKLLQQLDGSAIAHRTWLNPSLVIGSLGF
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCEEEECCCC
KEDLDGFNYV
HHCCCCCCCC
>Mature Secondary Structure 
ATIKDVAQLAGVSVATVSYVLNDSMPVSEATRNKVLAAVAKLGYQPHRQGRNLQRQRTL
CCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEE
TIGVLLPQANLLCELDLATWLLEATNAATSAGYSLLLQPADSQARGDLADGWISFGTVLD
EEEEEECCCCEEEEHHHHHHHHHHHCCHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCC
PQLPQIWALAPPFEQPAVLCDAAFAAQRAVETLTHAGMQRIGLITLPRSIPGSARWYLGY
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHH
RRALRRAGIAFDPALVVEPADNRFHDGVAAYEALAASENDYDGLIVCGNQLATGVVMVDH
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEC
AKVPLIVSHSNTQRGISGFRWPTELWAHTLVRKLLQQLDGSAIAHRTWLNPSLVIGSLGF
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCEEEECCCC
KEDLDGFNYV
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]