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The map label for this gene is rnpA

Identifier: 159897295

GI number: 159897295

Start: 868386

End: 868757

Strand: Reverse

Name: rnpA

Synonym: Haur_0766

Alternate gene names: 159897295

Gene position: 868757-868386 (Counterclockwise)

Preceding gene: 159897296

Following gene: 159897294

Centisome position: 13.69

GC content: 56.18

Gene sequence:

>372_bases
ATGCAACGTTCACAGCGCCTTCGCTCGCCACGCGATTTTCGCCGCGTTCGCGAAGGCGGTCGTACATGGTCACACCCACT
CTTGGTCTTGAGCGTCGCACCAGCGCGAGCCAATCGCGTTCGTTGTGGCATTGTCGTTCGCAAGTCGCTGGGCACAGCCG
TCGAACGCAATCGCTACAAACGGCAAGTGCGCGAAGCAACACGTTTGGTCTACGATCAAATTCGCCCAGGTTGGGATGTG
ATATTTATTGTACGAGCGGGATTTCGCACAGCGGCCTGGGAGCAGATTCAGCAGGCCGTTTCGCGTTTACTGCAACAAGC
GCAGCTATGGCATGATCGTGAACAACCATCACAGGAAGATCGCCATGGGTAA

Upstream 100 bases:

>100_bases
AGGCCGCGCCGTTTTGAAAGCACGTCGTCAACGTGGCCGCTGGAAGTTAACTGTTAGCGACAAACGCCGACCAGCAGGCC
CAGGCGGTCATCGCTAAACA

Downstream 100 bases:

>100_bases
GATCTTATTGGCACTAATTCGCTTGTACCAGCGTTTTTCGCGATATACACCACCAAGTTGTATCTATACGCCAACCTGTT
CCCACTATGGCTATCAAGCT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MQRSQRLRSPRDFRRVREGGRTWSHPLLVLSVAPARANRVRCGIVVRKSLGTAVERNRYKRQVREATRLVYDQIRPGWDV
IFIVRAGFRTAAWEQIQQAVSRLLQQAQLWHDREQPSQEDRHG

Sequences:

>Translated_123_residues
MQRSQRLRSPRDFRRVREGGRTWSHPLLVLSVAPARANRVRCGIVVRKSLGTAVERNRYKRQVREATRLVYDQIRPGWDV
IFIVRAGFRTAAWEQIQQAVSRLLQQAQLWHDREQPSQEDRHG
>Mature_123_residues
MQRSQRLRSPRDFRRVREGGRTWSHPLLVLSVAPARANRVRCGIVVRKSLGTAVERNRYKRQVREATRLVYDQIRPGWDV
IFIVRAGFRTAAWEQIQQAVSRLLQQAQLWHDREQPSQEDRHG

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_HERA2 (A9AXK0)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001543542.1
- ProteinModelPortal:   A9AXK0
- SMR:   A9AXK0
- GeneID:   5732650
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_0766
- HOGENOM:   HBG728160
- OMA:   FARNANK
- ProtClustDB:   CLSK975085
- BioCyc:   HAUR316274:HAUR_0766-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14525; Mature: 14525

Theoretical pI: Translated: 12.23; Mature: 12.23

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSQRLRSPRDFRRVREGGRTWSHPLLVLSVAPARANRVRCGIVVRKSLGTAVERNRYK
CCCHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RQVREATRLVYDQIRPGWDVIFIVRAGFRTAAWEQIQQAVSRLLQQAQLWHDREQPSQED
HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RHG
CCC
>Mature Secondary Structure
MQRSQRLRSPRDFRRVREGGRTWSHPLLVLSVAPARANRVRCGIVVRKSLGTAVERNRYK
CCCHHHCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RQVREATRLVYDQIRPGWDVIFIVRAGFRTAAWEQIQQAVSRLLQQAQLWHDREQPSQED
HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RHG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA