Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159897271

Identifier: 159897271

GI number: 159897271

Start: 848079

End: 848615

Strand: Direct

Name: 159897271

Synonym: Haur_0742

Alternate gene names: NA

Gene position: 848079-848615 (Clockwise)

Preceding gene: 159897270

Following gene: 159897272

Centisome position: 13.36

GC content: 49.72

Gene sequence:

>537_bases
ATGTCATCCGAACTCCAATTCAATGTTTCCCAACTATTGCAAGAATATGTTGGGGCGACCCGCCAGTATACTTATGAAAA
CGAACAGCTTGATTTAGGTGATGGTAGCCGCCTGAGGATCACCGAAGGCGATGTCAAACTGACCCGCACCAAAAATGGGG
TCTTAGTAGATGCTGCGATGAGCGGCAACGTCACTTTAGAATGCGTGCGATGCTTAAGCGATTTCAGCCAACCTGTTGAG
TTCGATTTCGCCGAGGAATATTTCGCGACGGTTCATGCAACGACGGGCGCACCGTTGCCAGAACCAGAAGAGCCTGATGT
GTTCAAAATTAACGGCAACCATTTGCTTGATCTTGGCGATGCTGCCCGTGAATACACGCTCATCAACTTACCAATCGCGC
CGATTTGTCGCCCCGATTGTCGTGGTTTGTCGTTCGATGGCCAAAACCTCAACGATAACCCAGAAGCCGATAATTTGGAC
GATCAAGTGATCGATGAGCGCCTTGCCGCGCTCAAACAATTGCTGAAAGGAGCCTAG

Upstream 100 bases:

>100_bases
CAAAATGGCCTCGATGAACTGGGCGTAGTTTGACAGAGCGCGTTCTCGCGCCTATAATGTCACGTCGCTTGCGGGTTGAA
TTCCAGCAGGAGGTCACTGT

Downstream 100 bases:

>100_bases
TTTCTCATGGGCGCATTGCCACGTCGTAAAATTACCCGCGAACAACGCGGGCACCGCCGCCAACATCTTGCTTTGACCGC
ACCTTCATTGTCGGCTTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAMSGNVTLECVRCLSDFSQPVE
FDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGDAAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLD
DQVIDERLAALKQLLKGA

Sequences:

>Translated_178_residues
MSSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAMSGNVTLECVRCLSDFSQPVE
FDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGDAAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLD
DQVIDERLAALKQLLKGA
>Mature_177_residues
SSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAMSGNVTLECVRCLSDFSQPVEF
DFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGDAAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLDD
QVIDERLAALKQLLKGA

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19680; Mature: 19549

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAM
CCCCCEECHHHHHHHHHCCHHEEECCCCEEECCCCCEEEEECCCEEEEECCCCEEEEEEC
SGNVTLECVRCLSDFSQPVEFDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGD
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEECCCEEEECCC
AAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLDDQVIDERLAALKQLLKGA
CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAM
CCCCEECHHHHHHHHHCCHHEEECCCCEEECCCCCEEEEECCCEEEEECCCCEEEEEEC
SGNVTLECVRCLSDFSQPVEFDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGD
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEECCCEEEECCC
AAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLDDQVIDERLAALKQLLKGA
CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA