Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159897271
Identifier: 159897271
GI number: 159897271
Start: 848079
End: 848615
Strand: Direct
Name: 159897271
Synonym: Haur_0742
Alternate gene names: NA
Gene position: 848079-848615 (Clockwise)
Preceding gene: 159897270
Following gene: 159897272
Centisome position: 13.36
GC content: 49.72
Gene sequence:
>537_bases ATGTCATCCGAACTCCAATTCAATGTTTCCCAACTATTGCAAGAATATGTTGGGGCGACCCGCCAGTATACTTATGAAAA CGAACAGCTTGATTTAGGTGATGGTAGCCGCCTGAGGATCACCGAAGGCGATGTCAAACTGACCCGCACCAAAAATGGGG TCTTAGTAGATGCTGCGATGAGCGGCAACGTCACTTTAGAATGCGTGCGATGCTTAAGCGATTTCAGCCAACCTGTTGAG TTCGATTTCGCCGAGGAATATTTCGCGACGGTTCATGCAACGACGGGCGCACCGTTGCCAGAACCAGAAGAGCCTGATGT GTTCAAAATTAACGGCAACCATTTGCTTGATCTTGGCGATGCTGCCCGTGAATACACGCTCATCAACTTACCAATCGCGC CGATTTGTCGCCCCGATTGTCGTGGTTTGTCGTTCGATGGCCAAAACCTCAACGATAACCCAGAAGCCGATAATTTGGAC GATCAAGTGATCGATGAGCGCCTTGCCGCGCTCAAACAATTGCTGAAAGGAGCCTAG
Upstream 100 bases:
>100_bases CAAAATGGCCTCGATGAACTGGGCGTAGTTTGACAGAGCGCGTTCTCGCGCCTATAATGTCACGTCGCTTGCGGGTTGAA TTCCAGCAGGAGGTCACTGT
Downstream 100 bases:
>100_bases TTTCTCATGGGCGCATTGCCACGTCGTAAAATTACCCGCGAACAACGCGGGCACCGCCGCCAACATCTTGCTTTGACCGC ACCTTCATTGTCGGCTTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MSSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAMSGNVTLECVRCLSDFSQPVE FDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGDAAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLD DQVIDERLAALKQLLKGA
Sequences:
>Translated_178_residues MSSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAMSGNVTLECVRCLSDFSQPVE FDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGDAAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLD DQVIDERLAALKQLLKGA >Mature_177_residues SSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAMSGNVTLECVRCLSDFSQPVEF DFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGDAAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLDD QVIDERLAALKQLLKGA
Specific function: Unknown
COG id: COG1399
COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19680; Mature: 19549
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAM CCCCCEECHHHHHHHHHCCHHEEECCCCEEECCCCCEEEEECCCEEEEECCCCEEEEEEC SGNVTLECVRCLSDFSQPVEFDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGD CCCCHHHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEECCCEEEECCC AAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLDDQVIDERLAALKQLLKGA CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SSELQFNVSQLLQEYVGATRQYTYENEQLDLGDGSRLRITEGDVKLTRTKNGVLVDAAM CCCCEECHHHHHHHHHCCHHEEECCCCEEECCCCCEEEEECCCEEEEECCCCEEEEEEC SGNVTLECVRCLSDFSQPVEFDFAEEYFATVHATTGAPLPEPEEPDVFKINGNHLLDLGD CCCCHHHHHHHHHHCCCCCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEECCCEEEECCC AAREYTLINLPIAPICRPDCRGLSFDGQNLNDNPEADNLDDQVIDERLAALKQLLKGA CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA