Click here to switch to the map view.

The map label for this gene is ddrA [H]

Identifier: 159897064

GI number: 159897064

Start: 621672

End: 622127

Strand: Direct

Name: ddrA [H]

Synonym: Haur_0535

Alternate gene names: 159897064

Gene position: 621672-622127 (Clockwise)

Preceding gene: 159897063

Following gene: 159897065

Centisome position: 9.8

GC content: 51.1

Gene sequence:

>456_bases
ATGACACAACCATTCACCACTATCAAACCCAAGCTTGAAGCCCCGTTCCCCATGGATATTATTGAGATAAAGCCCACTGT
TGTCACGAAGGATAAGACCCGCGCTTTAGCTATTGCCTATGCCGAAGTCCGAGCCTATCAGGACAGGCTTGATGCTGTGG
TTGGTGGTGAATGGGCTGTGACCTATCGCCCCTTAGGGCCAGGTGCGGTTATTTGCCAGCTGACCCTAGTTGGCATCACT
CGTGAAGATGTTGGGGAAGCCGAGCAAACTGACCCGAATAAAGCGACGGTTGCCGTTGCCCAAGCGTTCAAACGCGCCTG
CTCGGCATTCGGGCTGGGCCGCTATCTGTACAGCATGCCAAAAGTATGGGCCGAATACGATCAGGAAAAAAAGTGCTTTG
TGTACCCTGATCGCATTATTGCCCATATGTATAAGCAGATTGGGATAAAGGTATGA

Upstream 100 bases:

>100_bases
ATGAAGCAGCGCTACAAAGTGTTGCCAAACACATCCTGCCAATAAAACCTATCACTACTGCCTAGTAGTTTGTTTTAATC
CCTGAACAGGATACCTCATT

Downstream 100 bases:

>100_bases
ACCTAGTCAATCTTGCAGGCACACAACTTCAGGTGCAGGAATATTTGCGGGCAGGCCAACTAGAGGCGGCCCGCAATATT
TTAATCAATCGCAATATAAG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA damage response protein A [H]

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTQPFTTIKPKLEAPFPMDIIEIKPTVVTKDKTRALAIAYAEVRAYQDRLDAVVGGEWAVTYRPLGPGAVICQLTLVGIT
REDVGEAEQTDPNKATVAVAQAFKRACSAFGLGRYLYSMPKVWAEYDQEKKCFVYPDRIIAHMYKQIGIKV

Sequences:

>Translated_151_residues
MTQPFTTIKPKLEAPFPMDIIEIKPTVVTKDKTRALAIAYAEVRAYQDRLDAVVGGEWAVTYRPLGPGAVICQLTLVGIT
REDVGEAEQTDPNKATVAVAQAFKRACSAFGLGRYLYSMPKVWAEYDQEKKCFVYPDRIIAHMYKQIGIKV
>Mature_150_residues
TQPFTTIKPKLEAPFPMDIIEIKPTVVTKDKTRALAIAYAEVRAYQDRLDAVVGGEWAVTYRPLGPGAVICQLTLVGITR
EDVGEAEQTDPNKATVAVAQAFKRACSAFGLGRYLYSMPKVWAEYDQEKKCFVYPDRIIAHMYKQIGIKV

Specific function: ssDNA-binding protein that contributes to the ionizing radiation resistance of D.deserti. Plays a role in DNA repair and genome reconstitution, in a RecA-independent process, since DdrA is essential for recovery from severe genomic fragmentation as a resu

COG id: COG4712

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RAD52 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007232 [H]

Pfam domain/function: PF04098 Rad52_Rad22 [H]

EC number: NA

Molecular weight: Translated: 16873; Mature: 16742

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPFTTIKPKLEAPFPMDIIEIKPTVVTKDKTRALAIAYAEVRAYQDRLDAVVGGEWAV
CCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
TYRPLGPGAVICQLTLVGITREDVGEAEQTDPNKATVAVAQAFKRACSAFGLGRYLYSMP
EEECCCCCCEEEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVWAEYDQEKKCFVYPDRIIAHMYKQIGIKV
HHHHHCCCCCCEEECHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQPFTTIKPKLEAPFPMDIIEIKPTVVTKDKTRALAIAYAEVRAYQDRLDAVVGGEWAV
CCCCCCCCCCCCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
TYRPLGPGAVICQLTLVGITREDVGEAEQTDPNKATVAVAQAFKRACSAFGLGRYLYSMP
EEECCCCCCEEEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVWAEYDQEKKCFVYPDRIIAHMYKQIGIKV
HHHHHCCCCCCEEECHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA