Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159896996

Identifier: 159896996

GI number: 159896996

Start: 541729

End: 542598

Strand: Direct

Name: 159896996

Synonym: Haur_0464

Alternate gene names: NA

Gene position: 541729-542598 (Clockwise)

Preceding gene: 159896995

Following gene: 159896997

Centisome position: 8.54

GC content: 49.89

Gene sequence:

>870_bases
ATGCGGCGACAAAAACCATTGGATTGGGCAACACTTGGGCCAATTGCGGTGCTGTTGGGCTTGTTATTGTTGATTGTGAA
TCAGCTTAATCAACCCAAAAATCAGTATGCTCCGTTGAGTGCCTATTTTAATGATGCTGCGGCGAGTGTGCCGCAAAGCC
AACTTACCCCCTTGCCGCCCACAACGTTACAAGCGATTGAGCAAAGCAACGCCGCTGGCAGCTCCAACCAAATCGATTTG
GTACTCGAAGCTGAGCTGTATCAAGACCAAAGTAACGAGTTAGCCAGCGAATTGCAAATTGCCCTCGATTATGTTCAAGA
ACGTACCAATATCCGTTTGGCCGAACGGGTTACGGTGGTGATCAGCCAAGATGCCCAATGTGGCTTCCATGGCGTAACCT
ACTCCGATGTGCGAGTGATTTATATCTATAGTTGTGCTGGGGTGGCACGCAGCCGTGTGGTGAATATTGCTGCTCATGAA
TTTGTCCATCAATTAGAGCAGGATCGCTATGGCGCTGCCCATTTGAGCACCGACTTGGTGCTTTCTGAGGGTTTTGCAAC
TTGGGGCGCTGGCCGTTATTGGCTGGGCAGTGCCAGCGATTTTACGAGCTTTGCCCGCGATTATCAGGCCAACGGGCAAG
CCTTACCCTTGGCAACCCACTATGCTGGCGTTGGCATCGATGGTATGAACGTGCTCTATTATCAATGGGCGAGTTTTGTC
GATTATTTGATTAATAACTATGGCCGTGAAGCCTTCGATCAATTGTATATTTCGGGTGGCGAACGTCAACCTGGCGCAGC
CAATTACGCAGCAATCTACAATCGCTCGTTTGGTTTGCTTGAGGCTGAATGGCGGCAAACGCTGGATTAG

Upstream 100 bases:

>100_bases
GTTTTGCGGTGGCCGATGCCAAGGGGATTACGGTGATTGAGCTTAGCGATCAATTGTGAGTGGTACAATAGCCGCTGCTG
ATGTGTGATTGGGGTTGGCA

Downstream 100 bases:

>100_bases
GCCGTGCTACAATGGCCCAAGCAATTGTGCAAAGGAGAGTCTATGCATCCGCCGTTTGGTCCGAATTTGCTTGAGTTAGG
CCCGATTGTAATTCGTATGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRRQKPLDWATLGPIAVLLGLLLLIVNQLNQPKNQYAPLSAYFNDAAASVPQSQLTPLPPTTLQAIEQSNAAGSSNQIDL
VLEAELYQDQSNELASELQIALDYVQERTNIRLAERVTVVISQDAQCGFHGVTYSDVRVIYIYSCAGVARSRVVNIAAHE
FVHQLEQDRYGAAHLSTDLVLSEGFATWGAGRYWLGSASDFTSFARDYQANGQALPLATHYAGVGIDGMNVLYYQWASFV
DYLINNYGREAFDQLYISGGERQPGAANYAAIYNRSFGLLEAEWRQTLD

Sequences:

>Translated_289_residues
MRRQKPLDWATLGPIAVLLGLLLLIVNQLNQPKNQYAPLSAYFNDAAASVPQSQLTPLPPTTLQAIEQSNAAGSSNQIDL
VLEAELYQDQSNELASELQIALDYVQERTNIRLAERVTVVISQDAQCGFHGVTYSDVRVIYIYSCAGVARSRVVNIAAHE
FVHQLEQDRYGAAHLSTDLVLSEGFATWGAGRYWLGSASDFTSFARDYQANGQALPLATHYAGVGIDGMNVLYYQWASFV
DYLINNYGREAFDQLYISGGERQPGAANYAAIYNRSFGLLEAEWRQTLD
>Mature_289_residues
MRRQKPLDWATLGPIAVLLGLLLLIVNQLNQPKNQYAPLSAYFNDAAASVPQSQLTPLPPTTLQAIEQSNAAGSSNQIDL
VLEAELYQDQSNELASELQIALDYVQERTNIRLAERVTVVISQDAQCGFHGVTYSDVRVIYIYSCAGVARSRVVNIAAHE
FVHQLEQDRYGAAHLSTDLVLSEGFATWGAGRYWLGSASDFTSFARDYQANGQALPLATHYAGVGIDGMNVLYYQWASFV
DYLINNYGREAFDQLYISGGERQPGAANYAAIYNRSFGLLEAEWRQTLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31985; Mature: 31985

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQKPLDWATLGPIAVLLGLLLLIVNQLNQPKNQYAPLSAYFNDAAASVPQSQLTPLPP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCHHHCCCCCC
TTLQAIEQSNAAGSSNQIDLVLEAELYQDQSNELASELQIALDYVQERTNIRLAERVTVV
HHHHHHHHCCCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHCEEEEHEEEEE
ISQDAQCGFHGVTYSDVRVIYIYSCAGVARSRVVNIAAHEFVHQLEQDRYGAAHLSTDLV
EECCCCCCCCCCEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LSEGFATWGAGRYWLGSASDFTSFARDYQANGQALPLATHYAGVGIDGMNVLYYQWASFV
HHCCCHHCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHH
DYLINNYGREAFDQLYISGGERQPGAANYAAIYNRSFGLLEAEWRQTLD
HHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MRRQKPLDWATLGPIAVLLGLLLLIVNQLNQPKNQYAPLSAYFNDAAASVPQSQLTPLPP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCHHHCCCCCC
TTLQAIEQSNAAGSSNQIDLVLEAELYQDQSNELASELQIALDYVQERTNIRLAERVTVV
HHHHHHHHCCCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHCEEEEHEEEEE
ISQDAQCGFHGVTYSDVRVIYIYSCAGVARSRVVNIAAHEFVHQLEQDRYGAAHLSTDLV
EECCCCCCCCCCEECCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LSEGFATWGAGRYWLGSASDFTSFARDYQANGQALPLATHYAGVGIDGMNVLYYQWASFV
HHCCCHHCCCCCEECCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHH
DYLINNYGREAFDQLYISGGERQPGAANYAAIYNRSFGLLEAEWRQTLD
HHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA