Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
---|---|
Accession | NC_009972 |
Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is zraS [C]
Identifier: 159896976
GI number: 159896976
Start: 520012
End: 522153
Strand: Direct
Name: zraS [C]
Synonym: Haur_0444
Alternate gene names: 159896976
Gene position: 520012-522153 (Clockwise)
Preceding gene: 159896975
Following gene: 159896977
Centisome position: 8.19
GC content: 43.84
Gene sequence:
>2142_bases ATGAAGCGTTTTGCTTGGTTGCGGCGCAAAGAATTACGCCCATTAATCGCTTTATTGAGTGTGGCTTTAGTTTCGATTGC CCTGTTGCAATGGAATTATTACCAAATGCGCTCGATGATTCAATCGCAAATCACGGCGTTTAATGGGATGACTCAAGCCC GTTTGAATATGAAACGTGGCTATTTGATTGCTGAGCAGGTATTAAATGGCAACCAAACCCTGCTGCCCCAAGATGCAATT GCCTATCTTGATCAGGCGATTTTGGCGGTTGATGATTGGCAGCAAGGTAAAAATCCCGTTGTAGTCTTTGATCAATTGTT GCCGCCAGATCCACCAACGCAGCAAGCGCTCACTGACTATCGCCAGCATTTGGTCAGCTTTCGAGCCTTATTATTGCAAC ATCTCAATCGCCCACAAGAGCAAGCCCAAACCACGATTGATCGCCGAATTGCCTTCTCAGAGTTGGAATCTGAAGCTGAG CAGTTGGAAAATCGTTTATACCTTGATTTGGAATTATCAATTAAACGGCAGGCCGAGCGCTATTCGTTGATGTTGGTTGG CTGGCTGATTTTCTTGGTGATTATTGCGGGAGTTGTCTATCGTTTGTTGGGTTTGCAGCGCTTGGCGGTGGCTCAATTGG CCGCCAGCGAAAAACAATTTCGAGCGCAATATCGTGGCATTCCAATTCCAACCTATACATGGCGTTGTATTGACGACGAT TTTATTCTCGAAGGTTTTAACGATGCAGCGATGATTATTACCCAAGGAGCAATTACCAAATTTGTCAATCAATCAGCTAG AATTGTCTATCGCAATGAGCCAGAGATTTTACACCATTTTGAGCGTTGTCAACGTGAAAAAATAACACTTCATCAAGAAA TTCGCTATGAGTTTAAATTAATCAATCAAGTTAAAGATTTGTATGTGAGCTATGTGTTTATCGAACCAGATTTTATTATG GTGCATACCGAAGATCGAACTGATCGCAATCAGTTGCAAATGCAATTAATTCGTGCCCAGAAAATGGAAAGTATTGGGCG CTTGGCTGGTGGGGTAGCTCACGATTTCAATAATTTGTTAACTGCAATTAGCGGTTATACAACCTTGGCGATTGATAGTG CTCAGCAAGGCTTTCCGGTGGTCGAAGAATTAACTGAAATTCAACATGCCACTGATCGAGCAGCAATGCTTACCAGTCAA TTATTAACCTTTGCACGTAAGCAGCAAATCCAACCAAAAATTGTCAATATCAACGATTTAATTATGTCGATGGAGAAATT GATTAGACGAGTTTTACCAGAATCAATTCAATGGCGAACTGTACTTAATGTTAATATTGATTTAGTTTTGGCTGATATCG GCCAGATTGAGCAAGTATTATTGAATTTAGTAGTCAATGCGCGTGATGCTATGCCTCAGGGTGGAAATTTGCTGGTTGAA ACAAATAATGTTGCAGTTGATGCAAATTATGCACGAACTCATATTGATGTACCAATTGGCAATTATGTTTTATTCGCGGT GAGCGATACCGGCATCGGCATGACCCAAGAAGTCCAGAGTCGGGCATTTGAGCCATTTTTTACCACTAAAAGCGATCACG AAGGTACTGGTTTGGGTTTAGCCACCTGTTATGGCATTATCAAGCAACATGGCGGCCATATTGGTTTGTATAGCGAAGTT AATCATGGCACGACGATTAAAATTTATTTGCCACGTTCAGAGCAAGCTCAACTCGATGATGCTCCAAGCCTCATCCAAAA CTTACCTCGTGGCACGGAAACGATTTTGGTGAGCGAGGATGAGCCGCAGGTACGGGCGGTTTTGGTGCGGATGCTCCAAG GCTTGGGCTATAGCGTGCTCGAAGCACTGCATGGCTCCGAGGCCTTGGCCTTGCTCCAAGCCCAGGCGCTTGGCACAATT CAGCTCTTAATTACTGATATGGTTATGCCACAAATGGGTGGTTTTGAGCTGAGCCAACGGGTTGCTGAGCTTGATCCTCA GCTCAAAATTTTGTTTATTTCGGGCTACTCCGAGCATAGTTTGGCGCAACATCAGCAATTAGCCCAACAGCCTTTGTTGC TGAGCAAGCCATTTTCACTGGCTACTTTGGCGCAAACAGTCCGCAAGGTGCTGGATGATTAG
Upstream 100 bases:
>100_bases GTGACGAACATTATGGCTTAATTGCGCCGTTTGGGTTTTCGCGCGAGCAATTGCCCAATCGTTCAACCGCCAGTCTGCTC CAAGGTTGTGAGAATGGCTC
Downstream 100 bases:
>100_bases AGCGAATTAAGCCACAGATTGACACAGATGGTTAGGATTTGTTTTTGCATACTAACGATTCAATAGTTGTACCTACAAGC GGTTTTGCCACGAATTGCAC
Product: integral membrane sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MKRFAWLRRKELRPLIALLSVALVSIALLQWNYYQMRSMIQSQITAFNGMTQARLNMKRGYLIAEQVLNGNQTLLPQDAI AYLDQAILAVDDWQQGKNPVVVFDQLLPPDPPTQQALTDYRQHLVSFRALLLQHLNRPQEQAQTTIDRRIAFSELESEAE QLENRLYLDLELSIKRQAERYSLMLVGWLIFLVIIAGVVYRLLGLQRLAVAQLAASEKQFRAQYRGIPIPTYTWRCIDDD FILEGFNDAAMIITQGAITKFVNQSARIVYRNEPEILHHFERCQREKITLHQEIRYEFKLINQVKDLYVSYVFIEPDFIM VHTEDRTDRNQLQMQLIRAQKMESIGRLAGGVAHDFNNLLTAISGYTTLAIDSAQQGFPVVEELTEIQHATDRAAMLTSQ LLTFARKQQIQPKIVNINDLIMSMEKLIRRVLPESIQWRTVLNVNIDLVLADIGQIEQVLLNLVVNARDAMPQGGNLLVE TNNVAVDANYARTHIDVPIGNYVLFAVSDTGIGMTQEVQSRAFEPFFTTKSDHEGTGLGLATCYGIIKQHGGHIGLYSEV NHGTTIKIYLPRSEQAQLDDAPSLIQNLPRGTETILVSEDEPQVRAVLVRMLQGLGYSVLEALHGSEALALLQAQALGTI QLLITDMVMPQMGGFELSQRVAELDPQLKILFISGYSEHSLAQHQQLAQQPLLLSKPFSLATLAQTVRKVLDD
Sequences:
>Translated_713_residues MKRFAWLRRKELRPLIALLSVALVSIALLQWNYYQMRSMIQSQITAFNGMTQARLNMKRGYLIAEQVLNGNQTLLPQDAI AYLDQAILAVDDWQQGKNPVVVFDQLLPPDPPTQQALTDYRQHLVSFRALLLQHLNRPQEQAQTTIDRRIAFSELESEAE QLENRLYLDLELSIKRQAERYSLMLVGWLIFLVIIAGVVYRLLGLQRLAVAQLAASEKQFRAQYRGIPIPTYTWRCIDDD FILEGFNDAAMIITQGAITKFVNQSARIVYRNEPEILHHFERCQREKITLHQEIRYEFKLINQVKDLYVSYVFIEPDFIM VHTEDRTDRNQLQMQLIRAQKMESIGRLAGGVAHDFNNLLTAISGYTTLAIDSAQQGFPVVEELTEIQHATDRAAMLTSQ LLTFARKQQIQPKIVNINDLIMSMEKLIRRVLPESIQWRTVLNVNIDLVLADIGQIEQVLLNLVVNARDAMPQGGNLLVE TNNVAVDANYARTHIDVPIGNYVLFAVSDTGIGMTQEVQSRAFEPFFTTKSDHEGTGLGLATCYGIIKQHGGHIGLYSEV NHGTTIKIYLPRSEQAQLDDAPSLIQNLPRGTETILVSEDEPQVRAVLVRMLQGLGYSVLEALHGSEALALLQAQALGTI QLLITDMVMPQMGGFELSQRVAELDPQLKILFISGYSEHSLAQHQQLAQQPLLLSKPFSLATLAQTVRKVLDD >Mature_713_residues MKRFAWLRRKELRPLIALLSVALVSIALLQWNYYQMRSMIQSQITAFNGMTQARLNMKRGYLIAEQVLNGNQTLLPQDAI AYLDQAILAVDDWQQGKNPVVVFDQLLPPDPPTQQALTDYRQHLVSFRALLLQHLNRPQEQAQTTIDRRIAFSELESEAE QLENRLYLDLELSIKRQAERYSLMLVGWLIFLVIIAGVVYRLLGLQRLAVAQLAASEKQFRAQYRGIPIPTYTWRCIDDD FILEGFNDAAMIITQGAITKFVNQSARIVYRNEPEILHHFERCQREKITLHQEIRYEFKLINQVKDLYVSYVFIEPDFIM VHTEDRTDRNQLQMQLIRAQKMESIGRLAGGVAHDFNNLLTAISGYTTLAIDSAQQGFPVVEELTEIQHATDRAAMLTSQ LLTFARKQQIQPKIVNINDLIMSMEKLIRRVLPESIQWRTVLNVNIDLVLADIGQIEQVLLNLVVNARDAMPQGGNLLVE TNNVAVDANYARTHIDVPIGNYVLFAVSDTGIGMTQEVQSRAFEPFFTTKSDHEGTGLGLATCYGIIKQHGGHIGLYSEV NHGTTIKIYLPRSEQAQLDDAPSLIQNLPRGTETILVSEDEPQVRAVLVRMLQGLGYSVLEALHGSEALALLQAQALGTI QLLITDMVMPQMGGFELSQRVAELDPQLKILFISGYSEHSLAQHQQLAQQPLLLSKPFSLATLAQTVRKVLDD
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=245, Percent_Identity=31.4285714285714, Blast_Score=110, Evalue=4e-25, Organism=Escherichia coli, GI1788549, Length=257, Percent_Identity=31.5175097276265, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1788713, Length=261, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI48994928, Length=274, Percent_Identity=27.7372262773723, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1790300, Length=252, Percent_Identity=29.3650793650794, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 80671; Mature: 80671
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFAWLRRKELRPLIALLSVALVSIALLQWNYYQMRSMIQSQITAFNGMTQARLNMKRG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCC YLIAEQVLNGNQTLLPQDAIAYLDQAILAVDDWQQGKNPVVVFDQLLPPDPPTQQALTDY HHHHHHHHCCCCCCCCHHHHHHHHHHHHEEHHHHCCCCCEEEECCCCCCCCCHHHHHHHH RQHLVSFRALLLQHLNRPQEQAQTTIDRRIAFSELESEAEQLENRLYLDLELSIKRQAER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHH YSLMLVGWLIFLVIIAGVVYRLLGLQRLAVAQLAASEKQFRAQYRGIPIPTYTWRCIDDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCH FILEGFNDAAMIITQGAITKFVNQSARIVYRNEPEILHHFERCQREKITLHQEIRYEFKL HHHCCCCCCEEEEEHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH INQVKDLYVSYVFIEPDFIMVHTEDRTDRNQLQMQLIRAQKMESIGRLAGGVAHDFNNLL HHHHHHHHEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAISGYTTLAIDSAQQGFPVVEELTEIQHATDRAAMLTSQLLTFARKQQIQPKIVNINDL HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHH IMSMEKLIRRVLPESIQWRTVLNVNIDLVLADIGQIEQVLLNLVVNARDAMPQGGNLLVE HHHHHHHHHHHCCCCCCEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE TNNVAVDANYARTHIDVPIGNYVLFAVSDTGIGMTQEVQSRAFEPFFTTKSDHEGTGLGL ECCEEEECCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH ATCYGIIKQHGGHIGLYSEVNHGTTIKIYLPRSEQAQLDDAPSLIQNLPRGTETILVSED HHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECC EPQVRAVLVRMLQGLGYSVLEALHGSEALALLQAQALGTIQLLITDMVMPQMGGFELSQR CHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH VAELDPQLKILFISGYSEHSLAQHQQLAQQPLLLSKPFSLATLAQTVRKVLDD HHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKRFAWLRRKELRPLIALLSVALVSIALLQWNYYQMRSMIQSQITAFNGMTQARLNMKRG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCC YLIAEQVLNGNQTLLPQDAIAYLDQAILAVDDWQQGKNPVVVFDQLLPPDPPTQQALTDY HHHHHHHHCCCCCCCCHHHHHHHHHHHHEEHHHHCCCCCEEEECCCCCCCCCHHHHHHHH RQHLVSFRALLLQHLNRPQEQAQTTIDRRIAFSELESEAEQLENRLYLDLELSIKRQAER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHH YSLMLVGWLIFLVIIAGVVYRLLGLQRLAVAQLAASEKQFRAQYRGIPIPTYTWRCIDDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCH FILEGFNDAAMIITQGAITKFVNQSARIVYRNEPEILHHFERCQREKITLHQEIRYEFKL HHHCCCCCCEEEEEHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH INQVKDLYVSYVFIEPDFIMVHTEDRTDRNQLQMQLIRAQKMESIGRLAGGVAHDFNNLL HHHHHHHHEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAISGYTTLAIDSAQQGFPVVEELTEIQHATDRAAMLTSQLLTFARKQQIQPKIVNINDL HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHH IMSMEKLIRRVLPESIQWRTVLNVNIDLVLADIGQIEQVLLNLVVNARDAMPQGGNLLVE HHHHHHHHHHHCCCCCCEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE TNNVAVDANYARTHIDVPIGNYVLFAVSDTGIGMTQEVQSRAFEPFFTTKSDHEGTGLGL ECCEEEECCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH ATCYGIIKQHGGHIGLYSEVNHGTTIKIYLPRSEQAQLDDAPSLIQNLPRGTETILVSED HHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECC EPQVRAVLVRMLQGLGYSVLEALHGSEALALLQAQALGTIQLLITDMVMPQMGGFELSQR CHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH VAELDPQLKILFISGYSEHSLAQHQQLAQQPLLLSKPFSLATLAQTVRKVLDD HHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA