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The map label for this gene is sem

Identifier: 15927403

GI number: 15927403

Start: 1879851

End: 1880570

Strand: Reverse

Name: sem

Synonym: SA1647

Alternate gene names: 15927403

Gene position: 1880570-1879851 (Counterclockwise)

Preceding gene: 15927404

Following gene: 15927402

Centisome position: 66.81

GC content: 28.47

Gene sequence:

>720_bases
ATGAAAAGAATACTTATCATTGTTGTTTTATTGTTTTGCTATTCGCAAAATCATATCGCAACCGCTGATGTCGGAGTTTT
GAATCTTAGGAACTATTATGGTAGCTATCCAATTGAAGACCACCAAAGTATTAATCCTGAAAATAATCATCTTTCGCATC
AATTAGTTTTTTCTATGGATAATTCGACAGTAACAGCTGAATTTAAGAACGTTGATGATGTAAAGAAATTCAAAAATCAT
GCTGTAGATGTATATGGTCTAAGTTATAGTGGATATTGTTTGAAAAACAAATATATATACGGTGGAGTTACATTAGCAGG
TGATTATTTAGAGAAATCTAGACGTATTCCTATTAATCTTTGGGTTAATGGAGAACATCAAACTATATCTACTGACAAAG
TATCAACTAATAAAAAGTTAGTAACAGCTCAAGAAATTGATACTAAATTAAGAAGATATCTACAAGAAGAATATAATATT
TATGGCTTTAATGATACAAATAAAGGAAGAAATTATGGTAATAAGTCAAAATTTAGTTCTGGATTTAATGCAGGAAAAAT
ATTATTTCATTTGAATGATGGTTCATCATTTTCTTATGACTTATTTGATACTGGAACAGGACAAGCTGAAAGTTTCTTAA
AAATATATAATGACAACAAAACTGTCGAAACTGAAAAATTCCATTTAGATGTAGAAATATCTTATAAGGACGAAAGTTGA

Upstream 100 bases:

>100_bases
ATATAAGTGGGATAGAATCATGATGATTTAAGAAGAATTGGTTATTTTTACAATAAAAGATAATAAAGATAGAGAAGTTT
AAATATAGGAGAAATAAAAT

Downstream 100 bases:

>100_bases
AGTATTTCAATCATAACTTAGTAAAGGAAATGCCATGAAAAAATTTAAATATAGTTTTATATTAGTTTTTATATTACTTT
TTAACATTAAAGATCTTACG

Product: enterotoxin SEM

Products: NA

Alternate protein names: SED [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKRILIIVVLLFCYSQNHIATADVGVLNLRNYYGSYPIEDHQSINPENNHLSHQLVFSMDNSTVTAEFKNVDDVKKFKNH
AVDVYGLSYSGYCLKNKYIYGGVTLAGDYLEKSRRIPINLWVNGEHQTISTDKVSTNKKLVTAQEIDTKLRRYLQEEYNI
YGFNDTNKGRNYGNKSKFSSGFNAGKILFHLNDGSSFSYDLFDTGTGQAESFLKIYNDNKTVETEKFHLDVEISYKDES

Sequences:

>Translated_239_residues
MKRILIIVVLLFCYSQNHIATADVGVLNLRNYYGSYPIEDHQSINPENNHLSHQLVFSMDNSTVTAEFKNVDDVKKFKNH
AVDVYGLSYSGYCLKNKYIYGGVTLAGDYLEKSRRIPINLWVNGEHQTISTDKVSTNKKLVTAQEIDTKLRRYLQEEYNI
YGFNDTNKGRNYGNKSKFSSGFNAGKILFHLNDGSSFSYDLFDTGTGQAESFLKIYNDNKTVETEKFHLDVEISYKDES
>Mature_239_residues
MKRILIIVVLLFCYSQNHIATADVGVLNLRNYYGSYPIEDHQSINPENNHLSHQLVFSMDNSTVTAEFKNVDDVKKFKNH
AVDVYGLSYSGYCLKNKYIYGGVTLAGDYLEKSRRIPINLWVNGEHQTISTDKVSTNKKLVTAQEIDTKLRRYLQEEYNI
YGFNDTNKGRNYGNKSKFSSGFNAGKILFHLNDGSSFSYDLFDTGTGQAESFLKIYNDNKTVETEKFHLDVEISYKDES

Specific function: Staphylococcal enterotoxins cause the intoxication staphylococcal food poisoning syndrome. The illness characterized by high fever, hypotension, diarrhea, shock, and in some cases death [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the staphylococcal/streptococcal toxin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008992
- InterPro:   IPR006126
- InterPro:   IPR006173
- InterPro:   IPR016091
- InterPro:   IPR013307
- InterPro:   IPR006123
- InterPro:   IPR006177 [H]

Pfam domain/function: PF02876 Stap_Strp_tox_C; PF01123 Stap_Strp_toxin [H]

EC number: NA

Molecular weight: Translated: 27371; Mature: 27371

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00278 STAPH_STREP_TOXIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRILIIVVLLFCYSQNHIATADVGVLNLRNYYGSYPIEDHQSINPENNHLSHQLVFSMD
CCHHHHHHHHHHHCCCCCEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEC
NSTVTAEFKNVDDVKKFKNHAVDVYGLSYSGYCLKNKYIYGGVTLAGDYLEKSRRIPINL
CCEEEEEECCCHHHHHHHHCCEEEEEECCCCEEEECCEEEECEEEECHHHHHCCCCEEEE
WVNGEHQTISTDKVSTNKKLVTAQEIDTKLRRYLQEEYNIYGFNDTNKGRNYGNKSKFSS
EECCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHCCC
GFNAGKILFHLNDGSSFSYDLFDTGTGQAESFLKIYNDNKTVETEKFHLDVEISYKDES
CCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEEEEEEEECCCC
>Mature Secondary Structure
MKRILIIVVLLFCYSQNHIATADVGVLNLRNYYGSYPIEDHQSINPENNHLSHQLVFSMD
CCHHHHHHHHHHHCCCCCEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEC
NSTVTAEFKNVDDVKKFKNHAVDVYGLSYSGYCLKNKYIYGGVTLAGDYLEKSRRIPINL
CCEEEEEECCCHHHHHHHHCCEEEEEECCCCEEEECCEEEECEEEECHHHHHCCCCEEEE
WVNGEHQTISTDKVSTNKKLVTAQEIDTKLRRYLQEEYNIYGFNDTNKGRNYGNKSKFSS
EECCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHCCC
GFNAGKILFHLNDGSSFSYDLFDTGTGQAESFLKIYNDNKTVETEKFHLDVEISYKDES
CCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2549000; 9003758 [H]