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The map label for this gene is desR [H]

Identifier: 15926903

GI number: 15926903

Start: 1320385

End: 1320987

Strand: Direct

Name: desR [H]

Synonym: SA1159

Alternate gene names: 15926903

Gene position: 1320385-1320987 (Clockwise)

Preceding gene: 15926902

Following gene: 15926905

Centisome position: 46.91

GC content: 29.85

Gene sequence:

>603_bases
ATGACATCTTTAATTATTGCAGAAGATCAAAATATGTTACGACAGGCAATGGTTCAATTAATTAAACTACATGGTGATTT
TGAAATTTTAGCAGATACTGATAATGGTCTCGATGCAATGAAACTTATTGAAGAATATAATCCTAACGTTGTTATTTTAG
ATATAGAAATGCCAGGCATGACTGGACTTGAAGTTTTAGCGGAAATTAGAAAAAAGCATTTGAATATTAAAGTGATTATT
GTAACAACTTTTAAAAGACCGGGATACTTTGAAAAAGCAGTTGTGAATGATGTGGATGCATATGTTTTAAAAGAACGTTC
TATAGAAGAATTGGTGGAAACCATTAATAAAGTAAATAACGGAGAGAAAGAATATAGCGCCACATTGATGACTTCATTTT
TTGTAGATAAAAACCCATTAACGCCCAAAGAACAAATTGTATTAAGGGAAATTGGCAATGGTTTAAGTAGTAAAGAAATA
AGTGAAAAATTATTTTTGACAGATGGAACAGTTAGAAATTATACATCTGTTATAATTGATAAATTATTTGCAGATAATCG
TTTTGATGCTTGGAAAAAGGCAAATGAAAAAGGCTGGATCTAA

Upstream 100 bases:

>100_bases
AAAGTATTTCACAGCGTGTACAACATTTAAATGGAACTTTAGCAGTCGACTCAACAAATGGAACTAAAATAATCATTGAA
ATCTCAACAGGAGGAATAGC

Downstream 100 bases:

>100_bases
ATACAAACAAAAAAGTATTGAGTGTTTTGATTTAAGAGACTTGGAAAGTGAGTCAATAATCAAAATCTTACTCAATACTT
TTATTTTGGTACTCGCAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVII
VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEI
SEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGWI

Sequences:

>Translated_200_residues
MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVII
VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEI
SEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGWI
>Mature_199_residues
TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV
TTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEIS
EKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGWI

Specific function: Member of the two-component regulatory system desR/desK, responsible for cold induction of the des gene coding for the Delta5 acyl-lipid desaturase [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=199, Percent_Identity=25.1256281407035, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=27.4111675126904, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787473, Length=200, Percent_Identity=28, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788521, Length=196, Percent_Identity=28.0612244897959, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786747, Length=189, Percent_Identity=23.2804232804233, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788222, Length=192, Percent_Identity=22.9166666666667, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22784; Mature: 22652

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM
CCCEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCC
TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
HHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHEECCCCHHHHHHHHHH
KLFADNRFDAWKKANEKGWI
HHHCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM
CCEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCC
TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
HHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHEECCCCHHHHHHHHHH
KLFADNRFDAWKKANEKGWI
HHHCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]