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The map label for this gene is ynbA [H]

Identifier: 15926889

GI number: 15926889

Start: 1304040

End: 1305278

Strand: Direct

Name: ynbA [H]

Synonym: SA1147

Alternate gene names: 15926889

Gene position: 1304040-1305278 (Clockwise)

Preceding gene: 15926887

Following gene: 15926890

Centisome position: 46.33

GC content: 31.48

Gene sequence:

>1239_bases
ATGGCTCAGCAACAAATTCATGATACTAAAAATAAACTAGAAAAAGCTGTCTTAGTCGGTGTACATGCTCAAGATGATAA
GCAATTTAATTTTGAGTCTACAATGGAGGAATTATCATCTTTATCAGAGACTTGCCAACTTGAAGTGTTGGGTCAAATTA
CTCAAAACAGAGATCGTGTAGATCGCAAATATTATGTTGGTAAAGGTAAAATTGAAGAAATTCAAGCATTTATTGAGTTC
AAAGATATTGATGTAGTCATCACAAATGATGAATTAACGACTGCACAATCCAAATCACTAAATGAAGCTTTAGGTGTAAA
AATTATTGATAGAACTCAGTTGATTCTTGAAATATTTGCATTAAGAGCAAGAAGTAAAGAAGGTAAATTGCAAGTAGAGC
TAGCACAACTTGATTATTTATTACCTAGATTGCAAGGCCATGGTAAAAGTCTTTCTCGTTTAGGTGGCGGTATTGGAACT
AGAGGCCCTGGTGAAACGAAGTTAGAGATGGATCGCAGACATATTCGAACTCGTATGAATGAAATTAAACATCAATTGCG
GACGGTAGAAGAACATCGCGAAAGATATCGAAATAAAAGAAATCAAAATCAGGTGTTTCAAGTAGCTTTAGTTGGTTATA
CAAATGCTGGTAAATCATCATGGTTTAATGTTTTAGCAAATGAAGAGACGTATGAAAAAGATCAATTATTTGCAACGTTA
GATCCTAAAACACGACAAATTCAAATAAATGATGGATTTAATTTAATTATTTCAGATACTGTTGGTTTTATACAGAAACT
ACCTACGACGTTAATTGCAGCTTTTAAATCAACTTTAGAAGAGGCTAAAGGTGCAGATTTATTAGTACATGTCGTAGATA
GTAGCCATCCTGAATACCGTACGCAGTATGACACAGTTAATGATTTAATCAAACAATTAGATATGAGTCATATTTCTCAA
ATAGTTATTTTTAATAAAAAGGACTTATGTGATCATGCATCAAATCGTCCAGCAAGTGATTTGCCTAATGTTTTTGTTTC
TTCTAAAAATGATGGTGATAAATTACTTGTTAAGACGTTATTTATTGATGAAATCAAAAGGCAATTAACTTATTATGATG
AGACAATTGCGACGAATAATGCAGATCGATTATATTTTCTAAAACAACATACATTAGTGACTGAACTTAAATATGATGAA
ATTGAAAATGTTTATCGTATAAAAGGATTTAAAAAATAA

Upstream 100 bases:

>100_bases
TTCGATTTACTTAAAATGTACCATAAAATCGTGTAATAGTCTTTACTAAAACTCTATGATAGAATACTTTGAGTAGGATT
TTATTAAGGAGATGTATAAC

Downstream 100 bases:

>100_bases
TAAAAGGACGAAATTCAAATGAAAGATATAAGTAAGATAGTAGCTGACGTCGAATCAACGTTAGCACCATATTTTAAAGA
AATTGAAGAAACAGCATATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MAQQQIHDTKNKLEKAVLVGVHAQDDKQFNFESTMEELSSLSETCQLEVLGQITQNRDRVDRKYYVGKGKIEEIQAFIEF
KDIDVVITNDELTTAQSKSLNEALGVKIIDRTQLILEIFALRARSKEGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGT
RGPGETKLEMDRRHIRTRMNEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFATL
DPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPEYRTQYDTVNDLIKQLDMSHISQ
IVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVKTLFIDEIKRQLTYYDETIATNNADRLYFLKQHTLVTELKYDE
IENVYRIKGFKK

Sequences:

>Translated_412_residues
MAQQQIHDTKNKLEKAVLVGVHAQDDKQFNFESTMEELSSLSETCQLEVLGQITQNRDRVDRKYYVGKGKIEEIQAFIEF
KDIDVVITNDELTTAQSKSLNEALGVKIIDRTQLILEIFALRARSKEGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGT
RGPGETKLEMDRRHIRTRMNEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFATL
DPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPEYRTQYDTVNDLIKQLDMSHISQ
IVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVKTLFIDEIKRQLTYYDETIATNNADRLYFLKQHTLVTELKYDE
IENVYRIKGFKK
>Mature_411_residues
AQQQIHDTKNKLEKAVLVGVHAQDDKQFNFESTMEELSSLSETCQLEVLGQITQNRDRVDRKYYVGKGKIEEIQAFIEFK
DIDVVITNDELTTAQSKSLNEALGVKIIDRTQLILEIFALRARSKEGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGTR
GPGETKLEMDRRHIRTRMNEIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFATLD
PKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPEYRTQYDTVNDLIKQLDMSHISQI
VIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVKTLFIDEIKRQLTYYDETIATNNADRLYFLKQHTLVTELKYDEI
ENVYRIKGFKK

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133116, Length=206, Percent_Identity=31.5533980582524, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI310124269, Length=198, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI310124267, Length=198, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI310124171, Length=198, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI310124169, Length=198, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI310133118, Length=222, Percent_Identity=30.1801801801802, Blast_Score=99, Evalue=6e-21,
Organism=Escherichia coli, GI1790615, Length=341, Percent_Identity=42.5219941348974, Blast_Score=253, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17561038, Length=300, Percent_Identity=29.6666666666667, Blast_Score=111, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24650079, Length=328, Percent_Identity=29.8780487804878, Blast_Score=122, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47336; Mature: 47205

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQQIHDTKNKLEKAVLVGVHAQDDKQFNFESTMEELSSLSETCQLEVLGQITQNRDRV
CCCHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
DRKYYVGKGKIEEIQAFIEFKDIDVVITNDELTTAQSKSLNEALGVKIIDRTQLILEIFA
CCEEEECCCCHHHHHHHHEEECEEEEEECCCCCCHHHHHHHHHHCEEEEHHHHHHHHHHH
LRARSKEGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRMN
HHHCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
EIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFATL
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEE
DPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPEYR
CCCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
TQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVKTL
HHHHHHHHHHHHHCHHHHHHEEEECCHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FIDEIKRQLTYYDETIATNNADRLYFLKQHTLVTELKYDEIENVYRIKGFKK
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AQQQIHDTKNKLEKAVLVGVHAQDDKQFNFESTMEELSSLSETCQLEVLGQITQNRDRV
CCHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
DRKYYVGKGKIEEIQAFIEFKDIDVVITNDELTTAQSKSLNEALGVKIIDRTQLILEIFA
CCEEEECCCCHHHHHHHHEEECEEEEEECCCCCCHHHHHHHHHHCEEEEHHHHHHHHHHH
LRARSKEGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRMN
HHHCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
EIKHQLRTVEEHRERYRNKRNQNQVFQVALVGYTNAGKSSWFNVLANEETYEKDQLFATL
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEE
DPKTRQIQINDGFNLIISDTVGFIQKLPTTLIAAFKSTLEEAKGADLLVHVVDSSHPEYR
CCCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH
TQYDTVNDLIKQLDMSHISQIVIFNKKDLCDHASNRPASDLPNVFVSSKNDGDKLLVKTL
HHHHHHHHHHHHHCHHHHHHEEEECCHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FIDEIKRQLTYYDETIATNNADRLYFLKQHTLVTELKYDEIENVYRIKGFKK
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]