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The map label for this gene is tsf

Identifier: 15926840

GI number: 15926840

Start: 1246148

End: 1247029

Strand: Direct

Name: tsf

Synonym: SA1100

Alternate gene names: 15926840

Gene position: 1246148-1247029 (Clockwise)

Preceding gene: 15926839

Following gene: 15926841

Centisome position: 44.27

GC content: 36.51

Gene sequence:

>882_bases
ATGGCAACTATTTCAGCAAAACTTGTTAAAGAATTACGTAAAAAAACTGGCGCGGGTATGATGGATTGTAAAAAAGCGCT
AACTGAAACTGATGGTGACATCGATAAAGCGATTGATTACCTACGTGAAAAAGGTATTGCTAAAGCAGCTAAAAAAGCAG
ACCGTATTGCGGCTGAAGGTTTAGTACATGTAGAAACTAAAGGTAACGACGCAGTTATCGTTGAAATCAACTCTGAAACA
GACTTTGTTGCTCGTAACGAAGGATTCCAAGAGTTAGTTAAAGAAATCGCTAATCAAGTATTAGATACAAAAGCTGAAAC
TGTTGAAGCTTTAATGGAAACAACTTTACCAAATGGTAAATCAGTTGATGAAAGAATTAAAGAAGCAATTTCAACAATCG
GTGAAAAATTAAGTGTTCGTCGTTTTGCTATCAGAACTAAAACTGATAACGATGCTTTCGGCGCTTACTTACACATGGGT
GGACGCATTGGTGTATTAACAGTTGTTGAAGGTTCAACTGACGAAGAAGCAGCAAGAGACGTTGCTATGCATATCGCTGC
AATCAACCCTAAATATGTTTCTTCTGAACAAGTTAGCGAAGAAGAAATCAACCACGAAAGAGAAGTTTTAAAACAACAAG
CATTAAATGAAGGTAAACCAGAAAACATCGTTGAAAAAATGGTGGAAGGACGTTTACGTAAATACTTACAAGAAATTTGT
GCTGTAGATCAAGACTTCGTTAAAAACCCTGATGTAACAGTTGAAGCTTTCTTAAAAACAAAAGGTGGAAAACTTGTTGA
CTTCGTACGCTATGAAGTAGGCGAAGGTATGGAAAAACGCGAAGAAAACTTTGCGGATGAAGTTAAAGGACAAATGAAAT
AA

Upstream 100 bases:

>100_bases
GAGGCAAATTACAAATATTCAATTAGAGTATTGGCAATCTTGCCTATAATAATGCTAAAATCATAATATATAAAATGATA
ACTTATTGGAGGAATAATGA

Downstream 100 bases:

>100_bases
TCTGTCATAAAGTAAAACAAGGAAGAAGACACCTTTAATGTTGCTTTATTAAAATGTAAATCATTCTAATAAAACGACAA
CTGTGTCTTCTTTACTTGTA

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MATISAKLVKELRKKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSET
DFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMG
GRIGVLTVVEGSTDEEAARDVAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK

Sequences:

>Translated_293_residues
MATISAKLVKELRKKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSET
DFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMG
GRIGVLTVVEGSTDEEAARDVAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
>Mature_292_residues
ATISAKLVKELRKKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVETKGNDAVIVEINSETD
FVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGKSVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGG
RIGVLTVVEGSTDEEAARDVAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEICA
VDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI171846268, Length=305, Percent_Identity=28.1967213114754, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI291084500, Length=326, Percent_Identity=26.3803680981595, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI291084498, Length=101, Percent_Identity=44.5544554455446, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI291084502, Length=101, Percent_Identity=44.5544554455446, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI1786366, Length=293, Percent_Identity=43.6860068259386, Blast_Score=230, Evalue=7e-62,
Organism=Caenorhabditis elegans, GI17561440, Length=300, Percent_Identity=28.6666666666667, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI19921466, Length=287, Percent_Identity=30.6620209059233, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_STAA1 (A7X1N5)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441837.1
- ProteinModelPortal:   A7X1N5
- SMR:   A7X1N5
- STRING:   A7X1N5
- EnsemblBacteria:   EBSTAT00000004633
- GeneID:   5561499
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1247
- eggNOG:   COG0264
- GeneTree:   EBGT00050000025294
- HOGENOM:   HBG713289
- OMA:   YLHGTRI
- ProtClustDB:   PRK09377
- BioCyc:   SAUR418127:SAHV_1247-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 32493; Mature: 32362

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATISAKLVKELRKKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGK
EEEEEECCCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCEEEEEEEECCCCHHHHHH
VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
CCCHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATISAKLVKELRKKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEG
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LVHVETKGNDAVIVEINSETDFVARNEGFQELVKEIANQVLDTKAETVEALMETTLPNGK
EEEEEECCCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SVDERIKEAISTIGEKLSVRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAARD
CHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCEEEEEEEECCCCHHHHHH
VAMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPENIVEKMVEGRLRKYLQEIC
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AVDQDFVKNPDVTVEAFLKTKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
CCCHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA