Click here to switch to the map view.

The map label for this gene is ysgA [H]

Identifier: 15926721

GI number: 15926721

Start: 1113193

End: 1113933

Strand: Direct

Name: ysgA [H]

Synonym: SA0984

Alternate gene names: 15926721

Gene position: 1113193-1113933 (Clockwise)

Preceding gene: 161376697

Following gene: 15926722

Centisome position: 39.55

GC content: 35.22

Gene sequence:

>741_bases
ATGGAACAAATTACTTCTGCACAAAATAATAGAATTAAACAAGCGAACAAGCTAAAAAAGAAACGTGAGAGGGATAAAAC
TGGATTAGCTTTAATTGAAGGTGTGCATTTAATTGAAGAAGCTTATCAAAGTGGAATTGTAATTACACAATTATTTGCAA
TTGAACCGGCAAGATTAGATCAGCAAATTATCGCATACGCGCAAGAAGTTTTTGAAATAAACATGAAAGTTGCTGAATCT
TTATCAGGTACAGTGACACCACAAGGGTTTTTCGCAATCATTGAGAAGCCGCATTATGATATTTCTAAAGCACAACAAGT
ATTGCTCATCGATCGTGTTCAAGATCCTGGAAATTTAGGCACATTAATTAGAACTGCGGATGCTGCTGGAATGGATGCTG
TAATAATGGAGAAGGGTACGACAGATCCTTATCAAGATAAAGTGTTGCGAGCGAGTCAAGGTAGTGTTTTCCATTTGCCA
GTTATGACACAAGATCTCGATACGTTTATTACTCAATTTAATGGTCCTGTTTATGGTACAGCACTTGAAAACGCAGTGGC
ATACAAAGAAGTTACTTCAAGTGATTCTTTTGCATTACTATTAGGTAATGAGGGAGAAGGTGTTAATCCTGAATTATTAG
CACATACTACACAAAATTTAATCATACCTATTTATGGTAAAGCTGAAAGTTTAAATGTAGCGATTGCAGGTAGTATTTTA
CTTTATCATTTGAAAGGTTGA

Upstream 100 bases:

>100_bases
GTGATAAAAGCGATTAATTAATATTAACTATACAATCAAATGTTTTCATCTTATTAATGATTAATATTTTTATTTTTAAA
AATAAAGCGAGGAGCTATCA

Downstream 100 bases:

>100_bases
CCGTGTTGAAAGTTTTCCGATATAATTATAATTAATTGTTTAACAGAACATTTCTACGTGAATGCATACACAATTGAATA
TAAACCAATAAAAAGGCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAES
LSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLP
VMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSIL
LYHLKG

Sequences:

>Translated_246_residues
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAES
LSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLP
VMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSIL
LYHLKG
>Mature_246_residues
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAES
LSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLP
VMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSIL
LYHLKG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=293, Percent_Identity=28.6689419795222, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI1790623, Length=140, Percent_Identity=32.1428571428571, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790083, Length=148, Percent_Identity=29.0540540540541, Blast_Score=64, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24666840, Length=273, Percent_Identity=25.2747252747253, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26914; Mature: 26914

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHEECCCHHHHH
QQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHEEEEEEECCCCCCCC
TLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNGPVYGT
HHEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCEEEH
ALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSIL
HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCCEEEEEECCCCEEEEEEEEEEE
LYHLKG
EEEECC
>Mature Secondary Structure
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHEECCCHHHHH
QQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHEEEEEEECCCCCCCC
TLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNGPVYGT
HHEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCEEEH
ALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSIL
HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCCEEEEEECCCCEEEEEEEEEEE
LYHLKG
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]