Click here to switch to the map view.

The map label for this gene is 15926675

Identifier: 15926675

GI number: 15926675

Start: 1066732

End: 1068429

Strand: Reverse

Name: 15926675

Synonym: SA0940

Alternate gene names: NA

Gene position: 1068429-1066732 (Counterclockwise)

Preceding gene: 228989736

Following gene: 15926671

Centisome position: 37.96

GC content: 33.86

Gene sequence:

>1698_bases
ATGAAACAATTACATCCAAATGAAGTAGGTGTATATGCACTTGGAGGTCTAGGTGAAATCGGTAAAAATACTTATGCAGT
TGAGTATAAAGACGAAATTGTCATTATCGATGCAGGTATCAAATTCCCTGATGATAACTTATTAGGGATTGATTATGTTA
TACCTGACTACACATATCTAGTTCAAAACCAAGATAAAATTGTTGGCCTATTTATAACACATGGTCACGAAGACCATATA
GGCGGTGTGCCCTTCCTATTAAAACAACTTAATATACCTATTTATGGTGGTCCTTTAGCATTAGGTTTAATCCGTAATAA
ACTTGAAGAACATCATTTATTACGTACTGCTAAACTAAATGAAATCAATGAGGACAGTGTGATTAAATCTAAGCACTTTA
CGATTTCTTTCTACTTAACTACGCATAGTATTCCTGAAACTTATGGCGTCATCGTAGATACACCTGAAGGAAAAGTAGTT
CATACCGGTGACTTTAAATTTGATTTTACACCTGTAGGCAAACCAGCAAACATTGCTAAAATGGCTCAATTAGGCGAAGA
AGGCGTTCTATGTTTACTTTCAGACTCAACAAATTCACTTGTGCCTGATTTTACTTTAAGCGAACGTGAAGTTGGTCAAA
ACGTAGATAAGATCTTCCGTAATTGTAAAGGTCGTATTATATTTGCTACCTTCGCTTCTAATATTTACCGAGTTCAACAA
GCAGTTGAAGCTGCTATCAAAAATAACCGTAAAATTGTTACGTTCGGTCGTTCGATGGAAAACAATATTAAAATCGGTAT
GGAACTTGGTTATATTAAAGCACCACCTGAAACATTTATTGAACCTAATAAAATTAATACCGTACCGAAGCATGAGTTAT
TGATACTATGTACTGGTTCACAAGGTGAACCAATGGCAGCATTATCTAGAATTGCTAATGGTACTCATAAGCAAATTAAA
ATTATACCTGAAGATACCGTTGTATTTAGTTCATCACCTATCCCAGGTAATACAAAAAGTATTAACAGAACTATTAATTC
CTTGTATAAAGCTGGTGCAGATGTTATCCATAGCAAGATTTCTAACATCCATACTTCAGGGCATGGTTCTCAAGGTGATC
AACAATTAATGCTTCGATTAATCAAGCCGAAATATTTCTTACCTATTCATGGTGAATACCGTATGTTAAAAGCACATGGT
GAGACTGGTGTTGAATGCGGCGTTGAAGAAGATAATGTCTTCATCTTTGATATTGGAGATGTCTTAGCTTTAACACACGA
TTCAGCACGTAAAGCTGGTCGCATTCCATCTGGTAATGTACTTGTTGATGGTAGTGGTATCGGTGATATCGGTAATGTTG
TAATAAGAGACCGTAAGCTATTATCTGAAGAAGGTTTAGTTATCGTTGTTGTTAGTATTGATTTTAATACAAATAAATTA
CTTTCTGGTCCAGACATTATTTCTCGAGGATTTGTATATATGAGGGAATCAGGTCAATTAATTTATGATGCACAACGCAA
AATCAAAACTGATGTTATTAGTAAGTTAAATCAAAATAAAGATATTCAATGGCATCAGATTAAATCTTCTATCATTGAAA
CATTACAACCTTATTTATTTGAAAAAACAGCTAGAAAACCAATGATTTTACCAGTCATTATGAAGGTAAACGAACAAAAA
GAATCAAACAATAAATAA

Upstream 100 bases:

>100_bases
ATCGTAATTTTAATATCGAATTTATCACTAAATTAGAGGGCGCACATTTAGATTACGAAAAAGAAAACTCAGAACACTTT
AATGTGGAGATTGCTAAATA

Downstream 100 bases:

>100_bases
TCAAAAAGCTACTAACTTTGAAGTGAAGTTTTAATTAAACTCACCACCCATTGTTAGTAGCTTTTTCTTTATATATGATG
AGCTTGAGACATAAATCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYLVQNQDKIVGLFITHGHEDHI
GGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLNEINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVV
HTGDFKFDFTPVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRIANGTHKQIK
IIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRMLKAHG
ETGVECGVEEDNVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLFEKTARKPMILPVIMKVNEQK
ESNNK

Sequences:

>Translated_565_residues
MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYLVQNQDKIVGLFITHGHEDHI
GGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLNEINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVV
HTGDFKFDFTPVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRIANGTHKQIK
IIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRMLKAHG
ETGVECGVEEDNVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLFEKTARKPMILPVIMKVNEQK
ESNNK
>Mature_565_residues
MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYLVQNQDKIVGLFITHGHEDHI
GGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLNEINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVV
HTGDFKFDFTPVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
AVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRIANGTHKQIK
IIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRMLKAHG
ETGVECGVEEDNVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLFEKTARKPMILPVIMKVNEQK
ESNNK

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 62670; Mature: 62670

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS00018 EF_HAND_1 ; PS00136 SUBTILASE_ASP ; PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
CCCCCCCCCCEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCEEEEEEECCCEEEE
VQNQDKIVGLFITHGHEDHIGGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLN
EECCCEEEEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCC
EINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVVHTGDFKFDFTPVGKPANIAK
CCCCCCEEEEEEEEEEEEEEECCCCCCCCEEEECCCCCEEECCCEEEEEECCCCCCCHHH
MAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCEEEEEHHHHHHHHHH
AVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGS
HHHHHHHCCCEEEEECCCCCCCEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEEEECC
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKI
CCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVEEDNVFIFDIGD
HHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCC
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
EEEEECCHHHHCCCCCCCCEEEECCCCCCCCCEEEECHHHHCCCCEEEEEEEEECCCCCC
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLF
CCCCCHHHCCEEEEECCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EKTARKPMILPVIMKVNEQKESNNK
HHHCCCCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL
CCCCCCCCCCEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCEEEEEEECCCEEEE
VQNQDKIVGLFITHGHEDHIGGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLN
EECCCEEEEEEEECCCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCC
EINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVVHTGDFKFDFTPVGKPANIAK
CCCCCCEEEEEEEEEEEEEEECCCCCCCCEEEECCCCCEEECCCEEEEEECCCCCCCHHH
MAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ
HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCEEEEEHHHHHHHHHH
AVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGS
HHHHHHHCCCEEEEECCCCCCCEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEEEECC
QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKI
CCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVEEDNVFIFDIGD
HHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCC
VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL
EEEEECCHHHHCCCCCCCCEEEECCCCCCCCCEEEECHHHHCCCCEEEEEEEEECCCCCC
LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLF
CCCCCHHHCCEEEEECCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EKTARKPMILPVIMKVNEQKESNNK
HHHCCCCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA