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The map label for this gene is yfmC [H]

Identifier: 15926625

GI number: 15926625

Start: 1011851

End: 1012810

Strand: Direct

Name: yfmC [H]

Synonym: SA0891

Alternate gene names: 15926625

Gene position: 1011851-1012810 (Clockwise)

Preceding gene: 15926622

Following gene: 15926627

Centisome position: 35.95

GC content: 33.85

Gene sequence:

>960_bases
GTGAATAGGAATATCGTTAAATTAGTTGTGTTTATGCTAATCTTAGTTGTAGCAGTAGCGGGTTGTGGTCAAAAAGATAC
TGAAGAGAAAACTGAAATGACGACAATAAAAGATGAATTAGGAACTGAAAAAATTAAGAAAAATCCTAAACGTGTTGTTG
TATTAGAATATAGTTTTGCTGATTATTTAGCAGCATTAGATATGAAACCTGTTGGTATTGCAGATGATGGCAGCACTAAA
AATATAACAAAGTCAGTAAGAGATAAGATTGGGGCATATGAATCGGTTGGATCTAGACCGCAACCGAATATGGAAGTGAT
AAGTAAATTAAAACCGGATTTGATCATTGCAGATGTTAGCAGACATAAGAAAATCAAATCAGAATTGAGCAAAATTGCTC
CGACAATCATGTTAGTTAGCGGTACGGGAGATTATAATGCAAATATTGAAGCATTTAAAACAGTCGCTAAAGCAGTAGGC
AAAGAGAAAGAAGGCGAGAAGCGTCTGGAAAAGCATGATAAAATATTAGCGGAGATTAGAAAGAAAATTGAACAGAGTAC
GTTAAAATCTGCATTTGCATTCGGTATCTCAAGAGCAGGTATGTTTATTAATAATGAAGATACATTTATGGGACAATTCT
TAATTAAAATGGGTATTCAACCTGAAGTCACAAAAGACAAAACTACGCATGTTGGTGAACGCAAGGGTGGTCCTTATATA
TATTTAAATAATGAAGAACTTGCCAATATCAATCCAAAAGTTATGATTTTAGCCACTGACGGAAAAACGGACAAAAATAG
AACGAAATTCATTGATCCTGCAGTTTGGAAATCATTAAAAGCTGTGAAAGATAACAAAGTTTATGACGTTGACCGAAATA
AGTGGTTGAAATCAAGGGGGATTATCGCAAGTGAAAGTATGGCAGAAGATTTAGAAAAAATTGCAGAAAAAGCAAAATAA

Upstream 100 bases:

>100_bases
TATGATAAGAAAAAATAATAGCATACCAAATATATCATAAACAAATTAAATGATAAAATAATAATGCAGTTTTCTATTAA
AGTTGTTTGGAGGTAAATAT

Downstream 100 bases:

>100_bases
AAATACAGCGCTACTCGTAAATCATATAAGAGTGGCGCTGTATTTTTAATTATGTTTATTATCTGTCGGATGTGATGATT
TACCTGAAAGTTTATTTCGA

Product: hypothetical protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTK
NITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVG
KEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYI
YLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK

Sequences:

>Translated_319_residues
MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTK
NITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVG
KEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYI
YLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK
>Mature_319_residues
MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTK
NITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVG
KEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYI
YLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: COG4594

COG function: function code P; ABC-type Fe3+-citrate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082411, Length=282, Percent_Identity=37.5886524822695, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 35567; Mature: 35567

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFA
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCEEEEEEECHH
DYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVS
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHCCCCEEEECHH
RHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIR
HHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYI
HHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCEE
YLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRG
EECCCHHCCCCCEEEEEEECCCCCCCCHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHCC
IIASESMAEDLEKIAEKAK
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFA
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCEEEEEEECHH
DYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVS
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHCCCCEEEECHH
RHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIR
HHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYI
HHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCEE
YLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRG
EECCCHHCCCCCEEEEEEECCCCCCCCHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHCC
IIASESMAEDLEKIAEKAK
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]